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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3339650 |
| Transcript ID | Lj2g3v3339650.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357477865|ref|XP_003609218.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 450 | 450 | – | – | |
| SignalP | 1 | 18 | 18 | – | – | |
| PANTHER | 6 | 260 | 255 | 0 | – | |
| PANTHER | 6 | 260 | 255 | 0 | – | |
| Gene3D | 67 | 119 | 53 | 1.10E-05 | ||
| ProSiteProfiles | 68 | 98 | 31 | 9.58 | ||
| Pfam | 72 | 99 | 28 | 8.20E-05 | ||
| ProSiteProfiles | 99 | 133 | 35 | 10.6 | ||
| Pfam | 101 | 130 | 30 | 1.50E-05 | ||
| TIGRFAM | 101 | 134 | 34 | 1.60E-04 | ||
| ProSiteProfiles | 171 | 202 | 32 | 7.026 | ||
| Gene3D | 190 | 220 | 31 | 1.10E-05 | ||
| Pfam | 202 | 255 | 54 | 2.00E-08 | ||
| ProSiteProfiles | 203 | 237 | 35 | 10.008 | ||
| TIGRFAM | 206 | 232 | 27 | 0.0015 | ||
| ProSiteProfiles | 279 | 313 | 35 | 8.254 | ||
| Pfam | 284 | 308 | 25 | 0.033 | ||
| PANTHER | 367 | 449 | 83 | 0 | – | |
| PANTHER | 367 | 449 | 83 | 0 | – | |
| ProSiteProfiles | 383 | 413 | 31 | 6.511 | ||
| Gene3D | 386 | 445 | 60 | 1.10E-05 | ||
| TIGRFAM | 388 | 416 | 29 | 0.0027 | ||
| Pfam | 413 | 457 | 45 | 5.60E-09 | ||
| ProSiteProfiles | 414 | 448 | 35 | 12.529 | ||
| TIGRFAM | 416 | 449 | 34 | 2.60E-07 | ||
| Phobius | 451 | 468 | 18 | – | – | |
| Phobius | 469 | 549 | 81 | – | – | |
| ProSiteProfiles | 484 | 514 | 31 | 5.821 | ||
| ProSiteProfiles | 515 | 550 | 36 | 9.525 | ||
| Phobius | 550 | 568 | 19 | – | – | |
| Phobius | 569 | 1028 | 460 | – | – | |
| ProSiteProfiles | 586 | 616 | 31 | 5.908 | ||
| PANTHER | 587 | 900 | 314 | 0 | – | |
| PANTHER | 587 | 900 | 314 | 0 | – | |
| ProSiteProfiles | 618 | 652 | 35 | 10.271 | ||
| Pfam | 620 | 649 | 30 | 4.80E-04 | ||
| ProSiteProfiles | 653 | 687 | 35 | 5.952 | ||
| ProSiteProfiles | 688 | 718 | 31 | 7.75 | ||
| Gene3D | 717 | 746 | 30 | 1.10E-05 | ||
| Pfam | 719 | 766 | 48 | 7.30E-12 | ||
| ProSiteProfiles | 719 | 753 | 35 | 12.77 | ||
| TIGRFAM | 721 | 754 | 34 | 1.40E-07 | ||
| ProSiteProfiles | 754 | 784 | 31 | 6.697 | ||
| ProSiteProfiles | 790 | 820 | 31 | 6.182 | ||
| Gene3D | 853 | 882 | 30 | 1.10E-05 | ||
| ProSiteProfiles | 859 | 893 | 35 | 6.171 | ||
| Pfam | 896 | 1017 | 122 | 5.20E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj2g3v3339650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3339650.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.