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Lj3g3v0201940.1

Overview

Field Value
Gene ID Lj3g3v0201940
Transcript ID Lj3g3v0201940.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 45-like isoform X1 [Cicer arietinum] gi|502135372|ref|XP_004502310.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22849:SF8
9 237 229 0 –
PANTHER
PTHR22849
9 237 229 0 –
PANTHER
PTHR22849
270 768 499 0 –
PANTHER
PTHR22849:SF8
270 768 499 0 –
SUPERFAMILY
SSF57850
279 357 79 3.53E-29 –
ProSiteProfiles
PS51698
281 355 75 41.223
IPR003613
Gene3D
G3DSA:3.30.40.10
282 353 72 2.10E-31
IPR013083
Pfam
PF04564
283 352 70 2.50E-19
IPR003613
SMART
SM00504
285 348 64 2.20E-34
IPR003613
Gene3D
G3DSA:1.25.10.10
421 709 289 3.70E-36
IPR011989
SUPERFAMILY
SSF48371
432 705 274 9.60E-28
IPR016024
SMART
SM00185
457 501 45 7.1
IPR000225
ProSiteProfiles
PS50176
468 514 47 8.732
IPR000225
CDD
cd00020
475 567 93 1.11E-05 –
SMART
SM00185
542 583 42 4.8
IPR000225
CDD
cd00020
632 686 55 6.71E-04 –
MobiDBLite
mobidb-lite
711 742 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v0201940.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0201940.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.