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Lj3g3v0247270.1

Overview

Field Value
Gene ID Lj3g3v0247270
Transcript ID Lj3g3v0247270.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein GLABRA 2-like [Glycine max] gi|356556218|ref|XP_003546423.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF46689
1 49 49 8.77E-14
IPR009057
Gene3D
G3DSA:1.10.10.60
1 52 52 4.40E-15
IPR009057
PANTHER
PTHR24326
1 63 63 1.10E-246 –
SMART
SM00389
1 48 48 2.20E-06
IPR001356
CDD
cd00086
1 42 42 5.79E-14 –
Pfam
PF00046
1 42 42 1.10E-14
IPR001356
PANTHER
PTHR24326:SF272
1 63 63 1.10E-246 –
ProSiteProfiles
PS50071
1 44 44 16.115
IPR001356
ProSitePatterns
PS00027
19 42 24 –
IPR017970
Coils
Coil
43 70 28 – –
Coils
Coil
94 114 21 – –
PANTHER
PTHR24326
94 107 14 1.10E-246 –
PANTHER
PTHR24326:SF272
94 107 14 1.10E-246 –
ProSiteProfiles
PS50848
147 383 237 39.526
IPR002913
SUPERFAMILY
SSF55961
149 380 232 2.61E-31 –
CDD
cd08875
151 379 229 9.35E-111 –
SMART
SM00234
156 380 225 1.40E-68
IPR002913
Pfam
PF01852
158 380 223 1.40E-54
IPR002913
Gene3D
G3DSA:3.30.530.20
173 192 20 6.80E-05
IPR023393
Gene3D
G3DSA:3.30.530.20
265 375 111 6.80E-05
IPR023393
PANTHER
PTHR24326
356 637 282 1.10E-246 –
PANTHER
PTHR24326:SF272
356 637 282 1.10E-246 –
SUPERFAMILY
SSF55961
402 574 173 3.43E-12 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj3g3v0247270.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0247270.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.