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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0257280 |
| Transcript ID | Lj3g3v0257280.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357454909|ref|XP_003597735.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 61 | 508 | 448 | 0 | – | |
| PANTHER | 61 | 508 | 448 | 0 | – | |
| ProSiteProfiles | 63 | 97 | 35 | 5.546 | ||
| ProSiteProfiles | 98 | 128 | 31 | 5.744 | ||
| ProSiteProfiles | 129 | 163 | 35 | 11.356 | ||
| Pfam | 129 | 175 | 47 | 4.10E-09 | ||
| TIGRFAM | 132 | 164 | 33 | 2.40E-05 | ||
| ProSiteProfiles | 164 | 198 | 35 | 6.007 | ||
| ProSiteProfiles | 199 | 229 | 31 | 6.895 | ||
| Pfam | 205 | 229 | 25 | 0.9 | ||
| SUPERFAMILY | 218 | 254 | 37 | 2.85E-06 | ||
| Gene3D | 226 | 261 | 36 | 1.50E-10 | ||
| ProSiteProfiles | 230 | 264 | 35 | 12.595 | ||
| Pfam | 230 | 273 | 44 | 3.30E-07 | ||
| TIGRFAM | 232 | 265 | 34 | 2.30E-05 | ||
| ProSiteProfiles | 300 | 330 | 31 | 7.235 | ||
| Gene3D | 329 | 485 | 157 | 1.50E-10 | ||
| ProSiteProfiles | 331 | 361 | 31 | 9.876 | ||
| Pfam | 331 | 377 | 47 | 6.20E-09 | ||
| TIGRFAM | 333 | 360 | 28 | 2.80E-05 | ||
| ProSiteProfiles | 365 | 399 | 35 | 7.355 | ||
| ProSiteProfiles | 401 | 431 | 31 | 7.092 | ||
| Pfam | 405 | 428 | 24 | 0.065 | ||
| ProSiteProfiles | 433 | 463 | 31 | 6.325 | ||
| SUPERFAMILY | 448 | 489 | 42 | 2.85E-06 | ||
| ProSiteProfiles | 467 | 501 | 35 | 8.385 | ||
| Pfam | 471 | 499 | 29 | 0.83 | ||
| Pfam | 505 | 627 | 123 | 1.20E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v0257280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0257280.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.