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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0257310 |
| Transcript ID | Lj3g3v0257310.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable peptide transporter At1g52190-like [Glycine max] gi|356557281|ref|XP_003546946.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 415 | 415 | 2.60E-252 | – | |
| PANTHER | 1 | 415 | 415 | 2.60E-252 | ||
| Phobius | 1 | 42 | 42 | – | – | |
| TMHMM | 36 | 58 | 23 | – | – | |
| Phobius | 43 | 61 | 19 | – | – | |
| SUPERFAMILY | 46 | 244 | 199 | 3.53E-10 | ||
| Gene3D | 46 | 245 | 200 | 1.70E-10 | – | |
| Phobius | 62 | 72 | 11 | – | – | |
| Phobius | 73 | 92 | 20 | – | – | |
| TMHMM | 73 | 92 | 20 | – | – | |
| ProSitePatterns | 88 | 112 | 25 | – | ||
| Phobius | 93 | 98 | 6 | – | – | |
| TMHMM | 99 | 121 | 23 | – | – | |
| Phobius | 99 | 119 | 21 | – | – | |
| Pfam | 100 | 405 | 306 | 3.90E-46 | ||
| Phobius | 120 | 144 | 25 | – | – | |
| Phobius | 145 | 168 | 24 | – | – | |
| TMHMM | 146 | 168 | 23 | – | – | |
| Phobius | 169 | 188 | 20 | – | – | |
| TMHMM | 188 | 210 | 23 | – | – | |
| Phobius | 189 | 210 | 22 | – | – | |
| Phobius | 211 | 215 | 5 | – | – | |
| Phobius | 216 | 237 | 22 | – | – | |
| TMHMM | 220 | 242 | 23 | – | – | |
| Phobius | 238 | 370 | 133 | – | – | |
| Phobius | 371 | 393 | 23 | – | – | |
| TMHMM | 371 | 393 | 23 | – | – | |
| Phobius | 394 | 415 | 22 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v0257310.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0257310.1, powered by CORGI.
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