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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0257320 |
| Transcript ID | Lj3g3v0257320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable peptide transporter At1g52190-like isoform X1 [Cicer arietinum] gi|502081063|ref|XP_004486755.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 35 | 35 | – | – | |
| PANTHER | 15 | 587 | 573 | 0 | – | |
| PANTHER | 15 | 587 | 573 | 0 | ||
| TMHMM | 30 | 52 | 23 | – | – | |
| SUPERFAMILY | 36 | 239 | 204 | 4.97E-13 | ||
| Phobius | 36 | 55 | 20 | – | – | |
| CDD | 41 | 236 | 196 | 7.79E-05 | ||
| Gene3D | 47 | 232 | 186 | 7.00E-08 | – | |
| Phobius | 56 | 66 | 11 | – | – | |
| TMHMM | 67 | 86 | 20 | – | – | |
| Phobius | 67 | 86 | 20 | – | – | |
| ProSitePatterns | 82 | 106 | 25 | – | ||
| Phobius | 87 | 92 | 6 | – | – | |
| Phobius | 93 | 112 | 20 | – | – | |
| TMHMM | 93 | 115 | 23 | – | – | |
| Pfam | 95 | 524 | 430 | 3.30E-68 | ||
| Phobius | 113 | 138 | 26 | – | – | |
| Phobius | 139 | 162 | 24 | – | – | |
| TMHMM | 140 | 162 | 23 | – | – | |
| Phobius | 163 | 182 | 20 | – | – | |
| TMHMM | 182 | 204 | 23 | – | – | |
| Phobius | 183 | 204 | 22 | – | – | |
| Phobius | 205 | 215 | 11 | – | – | |
| TMHMM | 214 | 236 | 23 | – | – | |
| Phobius | 216 | 236 | 21 | – | – | |
| Phobius | 237 | 329 | 93 | – | – | |
| SUPERFAMILY | 314 | 555 | 242 | 4.97E-13 | ||
| Phobius | 330 | 351 | 22 | – | – | |
| TMHMM | 331 | 353 | 23 | – | – | |
| Phobius | 352 | 370 | 19 | – | – | |
| TMHMM | 368 | 390 | 23 | – | – | |
| Phobius | 371 | 391 | 21 | – | – | |
| Phobius | 392 | 411 | 20 | – | – | |
| TMHMM | 411 | 430 | 20 | – | – | |
| Phobius | 412 | 431 | 20 | – | – | |
| Phobius | 432 | 450 | 19 | – | – | |
| TMHMM | 450 | 472 | 23 | – | – | |
| Phobius | 451 | 471 | 21 | – | – | |
| Phobius | 472 | 491 | 20 | – | – | |
| TMHMM | 485 | 507 | 23 | – | – | |
| Phobius | 492 | 511 | 20 | – | – | |
| Phobius | 512 | 535 | 24 | – | – | |
| TMHMM | 536 | 558 | 23 | – | – | |
| Phobius | 536 | 558 | 23 | – | – | |
| Phobius | 559 | 625 | 67 | – | – | |
| Coils | 599 | 619 | 21 | – | – | |
| MobiDBLite | 601 | 625 | 25 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v0257320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0257320.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.