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Lj3g3v0277880.1

Overview

Field Value
Gene ID Lj3g3v0277880
Transcript ID Lj3g3v0277880.1
Lotus japonicus genome version MG20 v3.0
Description MYB transcription factor MYB52 [Medicago truncatula] gi|149727987|gb|ABR28340.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 40 40 – –
PANTHER
PTHR24078
3 18 16 4.40E-106 –
Gene3D
G3DSA:4.10.60.10
3 21 19 7.30E-04
IPR001878
PANTHER
PTHR24078:SF169
3 18 16 4.40E-106 –
PANTHER
PTHR24078
43 260 218 4.40E-106 –
PANTHER
PTHR24078:SF169
43 260 218 4.40E-106 –
MobiDBLite
mobidb-lite
66 89 24 – –
ProSiteProfiles
PS51294
99 155 57 21.183
IPR017930
SUPERFAMILY
SSF46689
101 156 56 5.98E-17
IPR009057
TIGRFAM
TIGR01557
102 154 53 1.00E-18
IPR006447
SMART
SM00717
103 153 51 2.60E-10
IPR001005
Gene3D
G3DSA:1.10.10.60
103 149 47 1.10E-11
IPR009057
Pfam
PF00249
106 150 45 6.40E-11
IPR001005
CDD
cd00167
106 151 46 5.48E-09 –
MobiDBLite
mobidb-lite
162 239 78 – –
MobiDBLite
mobidb-lite
328 348 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj3g3v0277880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0277880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.