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Lj3g3v0306870.1

Overview

Field Value
Gene ID Lj3g3v0306870
Transcript ID Lj3g3v0306870.1
Lotus japonicus genome version MG20 v3.0
Description DEAD-box ATP-dependent RNA helicase [Medicago truncatula] gi|357454677|ref|XP_003597619.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031:SF219
1 405 405 2.00E-273 –
PANTHER
PTHR24031
1 405 405 2.00E-273 –
Gene3D
G3DSA:3.40.50.300
12 247 236 1.30E-92
IPR027417
ProSiteProfiles
PS51195
27 55 29 11.353
IPR014014
CDD
cd00268
29 233 205 6.93E-104 –
SMART
SM00487
46 249 204 1.20E-68
IPR014001
Pfam
PF00270
51 222 172 5.60E-49
IPR011545
ProSiteProfiles
PS51192
58 233 176 33.188
IPR014001
SUPERFAMILY
SSF52540
99 383 285 2.15E-76
IPR027417
ProSitePatterns
PS00039
179 187 9 –
IPR000629
CDD
cd00079
246 375 130 4.05E-42 –
Gene3D
G3DSA:3.40.50.300
248 404 157 1.20E-58
IPR027417
Pfam
PF00271
258 367 110 2.10E-28
IPR001650
ProSiteProfiles
PS51194
261 406 146 23.316
IPR001650
SMART
SM00490
286 367 82 9.50E-31
IPR001650
MobiDBLite
mobidb-lite
401 431 31 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 15

Expression data

Expression pattern

Expression pattern of Lj3g3v0306870.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0306870.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.