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Lj3g3v0323530.1

Overview

Field Value
Gene ID Lj3g3v0323530
Transcript ID Lj3g3v0323530.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic initiation factor 4A-10-like [Glycine max] gi|356550410|ref|XP_003543580.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
12 314 303 1.50E-253 –
PANTHER
PTHR24031:SF322
12 314 303 1.50E-253 –
SUPERFAMILY
SSF52540
34 244 211 1.16E-63
IPR027417
Gene3D
G3DSA:3.40.50.300
37 246 210 8.90E-72
IPR027417
ProSiteProfiles
PS51195
40 68 29 10.913
IPR014014
CDD
cd00268
42 242 201 3.56E-104 –
SMART
SM00487
59 256 198 5.90E-54
IPR014001
Pfam
PF00270
65 226 162 5.10E-40
IPR011545
ProSiteProfiles
PS51192
71 241 171 28.585
IPR014001
ProSitePatterns
PS00039
187 195 9 –
IPR000629
SUPERFAMILY
SSF52540
219 314 96 3.37E-11
IPR027417
Gene3D
G3DSA:3.40.50.300
247 314 68 3.30E-13
IPR027417
ProSiteProfiles
PS51194
252 314 63 6.974
IPR001650
CDD
cd00079
253 314 62 1.10E-08 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v0323530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0323530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.