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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0527240 |
| Transcript ID | Lj3g3v0527240.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: plasma membrane ATPase 1-like isoform 2 [Glycine max] gi|356520782|ref|XP_003529039.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 72 | 72 | – | – | |
| PANTHER | 9 | 801 | 793 | 0 | – | |
| PANTHER | 9 | 801 | 793 | 0 | – | |
| SMART | 25 | 97 | 73 | 1.20E-22 | ||
| SUPERFAMILY | 25 | 142 | 118 | 5.62E-85 | – | |
| Pfam | 28 | 91 | 64 | 2.90E-13 | ||
| Gene3D | 42 | 76 | 35 | 1.50E-41 | ||
| TIGRFAM | 44 | 823 | 780 | 0 | ||
| Phobius | 73 | 96 | 24 | – | – | |
| Gene3D | 77 | 136 | 60 | 6.90E-20 | ||
| Phobius | 97 | 107 | 11 | – | – | |
| Phobius | 108 | 124 | 17 | – | – | |
| Pfam | 111 | 330 | 220 | 3.30E-60 | ||
| TIGRFAM | 111 | 546 | 436 | 6.20E-49 | ||
| Phobius | 125 | 254 | 130 | – | – | |
| Gene3D | 137 | 240 | 104 | 1.50E-41 | ||
| SUPERFAMILY | 142 | 239 | 98 | 2.62E-28 | – | |
| PRINTS | 189 | 203 | 15 | 4.30E-41 | – | |
| SUPERFAMILY | 239 | 333 | 95 | 5.62E-85 | – | |
| Phobius | 255 | 277 | 23 | – | – | |
| TMHMM | 255 | 277 | 23 | – | – | |
| Gene3D | 255 | 355 | 101 | 6.90E-20 | ||
| Phobius | 278 | 288 | 11 | – | – | |
| Phobius | 289 | 311 | 23 | – | – | |
| TMHMM | 289 | 311 | 23 | – | – | |
| Phobius | 312 | 655 | 344 | – | – | |
| Pfam | 335 | 611 | 277 | 1.30E-15 | – | |
| SUPERFAMILY | 335 | 391 | 57 | 5.94E-37 | ||
| PRINTS | 339 | 353 | 15 | 4.30E-41 | – | |
| ProSitePatterns | 341 | 347 | 7 | – | ||
| Gene3D | 356 | 497 | 142 | 4.10E-30 | ||
| SUPERFAMILY | 440 | 644 | 205 | 5.94E-37 | ||
| PRINTS | 455 | 473 | 19 | 2.70E-57 | ||
| PRINTS | 493 | 504 | 12 | 4.30E-41 | – | |
| PRINTS | 515 | 525 | 11 | 4.30E-41 | – | |
| Gene3D | 564 | 863 | 300 | 2.30E-95 | ||
| PRINTS | 569 | 585 | 17 | 2.70E-57 | ||
| TIGRFAM | 572 | 677 | 106 | 1.10E-25 | ||
| PRINTS | 597 | 613 | 17 | 2.70E-57 | ||
| PRINTS | 597 | 616 | 20 | 4.30E-41 | – | |
| PRINTS | 620 | 632 | 13 | 4.30E-41 | – | |
| PRINTS | 628 | 653 | 26 | 2.70E-57 | ||
| SUPERFAMILY | 646 | 865 | 220 | 5.62E-85 | – | |
| TMHMM | 656 | 678 | 23 | – | – | |
| Phobius | 656 | 678 | 23 | – | – | |
| Phobius | 679 | 683 | 5 | – | – | |
| Phobius | 684 | 701 | 18 | – | – | |
| TMHMM | 685 | 702 | 18 | – | – | |
| Phobius | 702 | 720 | 19 | – | – | |
| TMHMM | 720 | 742 | 23 | – | – | |
| Phobius | 721 | 743 | 23 | – | – | |
| Phobius | 744 | 772 | 29 | – | – | |
| Phobius | 773 | 792 | 20 | – | – | |
| PRINTS | 778 | 799 | 22 | 2.70E-57 | ||
| Phobius | 793 | 803 | 11 | – | – | |
| TMHMM | 803 | 825 | 23 | – | – | |
| Phobius | 804 | 823 | 20 | – | – | |
| Phobius | 824 | 834 | 11 | – | – | |
| TMHMM | 835 | 854 | 20 | – | – | |
| Phobius | 835 | 854 | 20 | – | – | |
| PANTHER | 838 | 941 | 104 | 0 | – | |
| PANTHER | 838 | 941 | 104 | 0 | – | |
| Phobius | 855 | 968 | 114 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Proton-exporting ATPase activity, phosphorylative mechanism | Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Proton export across plasma membrane | The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region. |
Expression pattern of Lj3g3v0527240.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0527240.1, powered by CORGI.
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