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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0549570 |
| Transcript ID | Lj3g3v0549570.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g24000, mitochondrial-like [Cicer arietinum] gi|502124365|ref|XP_004498496.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 46 | 526 | 481 | 0 | – | |
| PANTHER | 46 | 526 | 481 | 0 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 5.755 | ||
| ProSiteProfiles | 111 | 141 | 31 | 9.142 | ||
| TIGRFAM | 114 | 141 | 28 | 8.10E-04 | ||
| Pfam | 141 | 190 | 50 | 2.20E-09 | ||
| ProSiteProfiles | 142 | 176 | 35 | 9.712 | ||
| ProSiteProfiles | 214 | 244 | 31 | 7.366 | ||
| Pfam | 219 | 241 | 23 | 0.1 | ||
| Pfam | 245 | 291 | 47 | 2.20E-09 | ||
| ProSiteProfiles | 246 | 282 | 37 | 10.698 | ||
| TIGRFAM | 248 | 280 | 33 | 5.00E-04 | ||
| ProSiteProfiles | 283 | 317 | 35 | 8.122 | ||
| SUPERFAMILY | 294 | 510 | 217 | 7.32E-08 | ||
| ProSiteProfiles | 318 | 348 | 31 | 6.928 | ||
| Pfam | 323 | 347 | 25 | 0.013 | ||
| TIGRFAM | 323 | 349 | 27 | 0.0013 | ||
| Gene3D | 324 | 506 | 183 | 2.50E-07 | ||
| Pfam | 349 | 396 | 48 | 7.90E-12 | ||
| ProSiteProfiles | 349 | 383 | 35 | 12.123 | ||
| TIGRFAM | 351 | 384 | 34 | 1.10E-07 | ||
| ProSiteProfiles | 384 | 418 | 35 | 10.961 | ||
| TIGRFAM | 386 | 418 | 33 | 4.60E-05 | ||
| ProSiteProfiles | 419 | 453 | 35 | 6.292 | ||
| ProSiteProfiles | 485 | 519 | 35 | 7.476 | ||
| Pfam | 492 | 517 | 26 | 0.13 | ||
| Pfam | 521 | 644 | 124 | 2.30E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v0549570.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0549570.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.