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Lj3g3v0618170.1

Overview

Field Value
Gene ID Lj3g3v0618170
Transcript ID Lj3g3v0618170.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: UMP/CMP kinase-like isoform X2 [Cicer arietinum] gi|502155651|ref|XP_004510144.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23359:SF100
21 209 189 6.00E-139 –
PANTHER
PTHR23359
21 209 189 6.00E-139
IPR000850
Gene3D
G3DSA:3.40.50.300
21 204 184 7.50E-63
IPR027417
Hamap
MF_03172
24 206 183 41.362
IPR006266
Hamap
MF_00235
25 204 180 40.009
IPR000850
TIGRFAM
TIGR01359
26 203 178 4.80E-81
IPR006266
SUPERFAMILY
SSF52540
26 204 179 1.27E-36
IPR027417
CDD
cd01428
26 195 170 1.01E-69
IPR000850
PRINTS
PR00094
28 41 14 2.60E-29
IPR000850
Pfam
PF00406
29 180 152 1.50E-48 –
PRINTS
PR00094
56 70 15 2.60E-29
IPR000850
ProSitePatterns
PS00113
104 115 12 –
IPR033690
PRINTS
PR00094
104 120 17 2.60E-29
IPR000850
PRINTS
PR00094
151 166 16 2.60E-29
IPR000850
PRINTS
PR00094
168 182 15 2.60E-29
IPR000850

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004127
Molecular function Cytidylate kinase activity Catalysis of the reaction: ATP + (d)CMP = ADP + (d)CDP.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006139
Biological process Nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
Subterm of
GO:0006207
Biological process 'de novo' pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors.
Subterm of
GO:0006221
Biological process Pyrimidine nucleotide biosynthetic process The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Subterm of
GO:0009041
Molecular function Uridylate kinase activity Catalysis of the reaction: ATP + (d)UMP = ADP + (d)UDP.
Subterm of
GO:0019205
Molecular function Nucleobase-containing compound kinase activity Catalysis of the transfer of a phosphate group, usually from ATP or GTP, to a nucleobase, nucleoside, nucleotide or polynucleotide substrate.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v0618170.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0618170.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.