Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0642600.1

Overview

Field Value
Gene ID Lj3g3v0642600
Transcript ID Lj3g3v0642600.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: splicing factor 3A subunit 2-like [Cicer arietinum] gi|502155744|ref|XP_004510177.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 21 21 – –
PANTHER
PTHR23205:SF0
2 221 220 7.10E-184 –
PANTHER
PTHR23205
2 221 220 7.10E-184 –
SUPERFAMILY
SSF57667
48 82 35 1.39E-05 –
SMART
SM00451
49 83 35 9.00E-08
IPR003604
Pfam
PF12874
52 76 25 7.90E-06 –
ProSiteProfiles
PS50171
52 82 31 9.296
IPR000690
SMART
SM01050
89 217 129 4.00E-18 –
Pfam
PF16835
110 204 95 9.40E-35
IPR031781
MobiDBLite
mobidb-lite
213 336 124 – –
PANTHER
PTHR23205
247 336 90 7.10E-184 –
PANTHER
PTHR23205:SF0
247 336 90 7.10E-184 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v0642600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0642600.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.