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PS50171

Source: ProSiteProfiles

Description

Zinc finger matrin-type profile.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Associated Lotus transcripts 12

Transcript Name Description Predicted domains Domain count
Lj1g3v0969930.1
– PREDICTED: splicing factor 3A subunit 3-like [Cicer arietinum] gi|502136296|ref|XP_004502635.1|
Domains
14
Lj1g3v0969930.2
– PREDICTED: splicing factor 3A subunit 3-like [Fragaria vesca subsp]. vesca] gi|470142668|ref|XP_004307025.1|
Domains
9
Lj3g3v0642600.1
– PREDICTED: splicing factor 3A subunit 2-like [Cicer arietinum] gi|502155744|ref|XP_004510177.1|
Domains
12
Lj4g3v0575060.1
– WW domain-binding protein [Medicago truncatula] gi|357475471|ref|XP_003608021.1|
Domains
9
Lj5g3v1263990.1
– C2H2 and C2HC zinc fingers superfamily protein isoform 1 [Theobroma cacao] gi|508727165|gb|EOY19062.1|
Domains
12
Lj5g3v1671380.1
– PREDICTED: U1 small nuclear ribonucleoprotein C-like isoform X1 [Cicer arietinum] gi|502117894|ref|XP_004495998.1|
Domains
13
LotjaGi1g1v0283800.1
– Splicing factor 3A subunit 3; TAIR: AT5G06160.1 splicing factor-like protein; Swiss-Prot: sp|Q9FG01|ATO_ARATH Splicing factor SF3a60 homolog; TrEMBL-Plants: tr|A0A151TS58|A0A151TS58_CAJCA Splicing factor 3A subunit 3; Found in the gene: LotjaGi1g1v0283800
Domains
14
LotjaGi1g1v0744200_LC.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|A0A072U5H3|A0A072U5H3_MEDTR U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi1g1v0744200_LC
Domains
17
LotjaGi3g1v0075400.1
– Splicing factor 3A subunit 2; TAIR: AT2G32600.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2; TrEMBL-Plants: tr|I1MCD5|I1MCD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075400
Domains
13
LotjaGi3g1v0075400.2
– Splicing factor 3A subunit 2; TAIR: AT2G32600.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2; TrEMBL-Plants: tr|A0A1J7GPB1|A0A1J7GPB1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0075400
Domains
13
LotjaGi4g1v0071400.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT1G49590.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q7XA66|ZOP1_ARATH Zinc finger protein ZOP1; TrEMBL-Plants: tr|I3S6A8|I3S6A8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0071400
Domains
15
LotjaGi5g1v0261800.1
– U1 small nuclear ribonucleoprotein C; TAIR: AT4G03120.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|F6HQ26|RU1C_VITVI U1 small nuclear ribonucleoprotein C; TrEMBL-Plants: tr|I3S8F7|I3S8F7_LOTJA U1 small nuclear ribonucleoprotein C; Found in the gene: LotjaGi5g1v0261800
Domains
15

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 8.33