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Lj3g3v0718210.1

Overview

Field Value
Gene ID Lj3g3v0718210
Transcript ID Lj3g3v0718210.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 140 140 – –
SMART
SM00717
159 230 72 0.011
IPR001005
Gene3D
G3DSA:1.10.10.60
161 249 89 6.70E-07
IPR009057
ProSiteProfiles
PS50090
162 228 67 4.101
IPR017877
PANTHER
PTHR10641
205 303 99 2.60E-42 –
PANTHER
PTHR10641:SF517
205 303 99 2.60E-42 –
ProSiteProfiles
PS51294
231 281 51 9.319
IPR017930
SMART
SM00717
232 279 48 2.00E-04
IPR001005
SUPERFAMILY
SSF46689
233 290 58 1.50E-09
IPR009057
CDD
cd00167
235 264 30 6.71E-04 –
Pfam
PF13921
236 294 59 2.80E-11 –
Gene3D
G3DSA:1.10.10.60
250 286 37 4.40E-09
IPR009057
ProSiteProfiles
PS50090
278 347 70 7.445
IPR017877
SMART
SM00717
282 349 68 2.3
IPR001005
Gene3D
G3DSA:1.10.10.60
287 348 62 8.00E-06
IPR009057
PANTHER
PTHR10641:SF517
323 374 52 2.60E-42 –
PANTHER
PTHR10641
323 374 52 2.60E-42 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v0718210.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0718210.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.