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Lj3g3v0718220.1

Overview

Field Value
Gene ID Lj3g3v0718220
Transcript ID Lj3g3v0718220.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 199 199 – –
SMART
SM00717
218 289 72 0.011
IPR001005
Gene3D
G3DSA:1.10.10.60
220 308 89 8.50E-07
IPR009057
ProSiteProfiles
PS50090
221 287 67 4.101
IPR017877
PANTHER
PTHR10641:SF517
264 362 99 2.60E-42 –
PANTHER
PTHR10641
264 362 99 2.60E-42 –
ProSiteProfiles
PS51294
290 340 51 9.319
IPR017930
SMART
SM00717
291 338 48 2.00E-04
IPR001005
SUPERFAMILY
SSF46689
292 349 58 1.59E-09
IPR009057
CDD
cd00167
294 323 30 0.00122806 –
Pfam
PF13921
295 353 59 3.50E-11 –
Gene3D
G3DSA:1.10.10.60
309 345 37 5.50E-09
IPR009057
ProSiteProfiles
PS50090
337 406 70 7.445
IPR017877
SMART
SM00717
341 408 68 2.3
IPR001005
Gene3D
G3DSA:1.10.10.60
346 407 62 1.00E-05
IPR009057
PANTHER
PTHR10641
382 433 52 2.60E-42 –
PANTHER
PTHR10641:SF517
382 433 52 2.60E-42 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj3g3v0718220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0718220.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.