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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0821140 |
| Transcript ID | Lj3g3v0821140.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357457245|ref|XP_003598903.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 89 | 89 | – | – | |
| PANTHER | 3 | 81 | 79 | 0 | – | |
| PANTHER | 3 | 81 | 79 | 0 | – | |
| PANTHER | 139 | 692 | 554 | 0 | – | |
| PANTHER | 139 | 692 | 554 | 0 | – | |
| ProSiteProfiles | 161 | 195 | 35 | 7.235 | ||
| ProSiteProfiles | 196 | 226 | 31 | 6.095 | ||
| Pfam | 231 | 280 | 50 | 1.20E-07 | ||
| ProSiteProfiles | 232 | 266 | 35 | 9.24 | ||
| TIGRFAM | 235 | 264 | 30 | 5.50E-04 | ||
| ProSiteProfiles | 267 | 301 | 35 | 11.312 | ||
| TIGRFAM | 269 | 303 | 35 | 9.90E-07 | ||
| Pfam | 301 | 349 | 49 | 1.20E-09 | ||
| ProSiteProfiles | 302 | 336 | 35 | 10.665 | ||
| TIGRFAM | 305 | 338 | 34 | 7.30E-05 | ||
| ProSiteProfiles | 337 | 371 | 35 | 10.654 | ||
| TIGRFAM | 340 | 372 | 33 | 3.20E-06 | ||
| SUPERFAMILY | 352 | 576 | 225 | 2.04E-06 | – | |
| Pfam | 354 | 470 | 117 | 8.30E-07 | ||
| ProSiteProfiles | 372 | 406 | 35 | 7.629 | ||
| Gene3D | 405 | 462 | 58 | 2.30E-08 | ||
| ProSiteProfiles | 407 | 441 | 35 | 11.06 | ||
| TIGRFAM | 410 | 442 | 33 | 2.00E-05 | ||
| ProSiteProfiles | 442 | 476 | 35 | 7.191 | ||
| ProSiteProfiles | 510 | 544 | 35 | 10.172 | ||
| Pfam | 511 | 555 | 45 | 3.30E-09 | ||
| Gene3D | 513 | 605 | 93 | 2.30E-08 | ||
| TIGRFAM | 513 | 545 | 33 | 1.10E-04 | ||
| ProSiteProfiles | 545 | 579 | 35 | 8.1 | ||
| ProSiteProfiles | 580 | 610 | 31 | 7.158 | ||
| Pfam | 583 | 606 | 24 | 0.44 | ||
| ProSiteProfiles | 616 | 650 | 35 | 8.254 | ||
| Pfam | 628 | 648 | 21 | 0.61 | ||
| TIGRFAM | 628 | 650 | 23 | 0.0032 | ||
| ProSiteProfiles | 651 | 685 | 35 | 8.813 | ||
| TIGRFAM | 653 | 683 | 31 | 8.70E-04 | ||
| Pfam | 653 | 682 | 30 | 0.0094 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0821140.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0821140.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.