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Lj3g3v0937880.1

Overview

Field Value
Gene ID Lj3g3v0937880
Transcript ID Lj3g3v0937880.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DEAD-box ATP-dependent RNA helicase 47, mitochondrial-like [Glycine max] gi|356557070|ref|XP_003546841.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 19 19 – –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 3 3 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
4 14 11 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
15 19 5 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
20 540 521 – –
MobiDBLite
mobidb-lite
41 73 33 – –
PANTHER
PTHR24031:SF303
46 332 287 8.10E-256 –
PANTHER
PTHR24031
46 332 287 8.10E-256 –
Gene3D
G3DSA:3.40.50.300
78 326 249 1.90E-53
IPR027417
ProSiteProfiles
PS51195
91 119 29 10.449
IPR014014
SMART
SM00487
110 336 227 1.40E-35
IPR014001
Pfam
PF00270
115 311 197 4.60E-34
IPR011545
ProSiteProfiles
PS51192
122 325 204 21.33
IPR014001
SUPERFAMILY
SSF52540
177 323 147 1.76E-50
IPR027417
Gene3D
G3DSA:3.40.50.300
365 528 164 4.20E-39
IPR027417
PANTHER
PTHR24031
366 534 169 8.10E-256 –
PANTHER
PTHR24031:SF303
366 534 169 8.10E-256 –
SUPERFAMILY
SSF52540
368 510 143 1.76E-50
IPR027417
CDD
cd00079
370 498 129 7.11E-27 –
ProSiteProfiles
PS51194
385 529 145 18.227
IPR001650
Pfam
PF00271
392 490 99 2.40E-21
IPR001650
SMART
SM00490
409 490 82 1.50E-22
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 16

Expression data

Expression pattern

Expression pattern of Lj3g3v0937880.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0937880.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.