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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0965980 |
| Transcript ID | Lj3g3v0965980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g79080, chloroplastic-like [Glycine max] gi|356525788|ref|XP_003531505.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 558 | 555 | 0 | – | |
| PANTHER | 4 | 558 | 555 | 0 | – | |
| SUPERFAMILY | 84 | 274 | 191 | 3.14E-07 | – | |
| ProSiteProfiles | 98 | 132 | 35 | 7.892 | ||
| ProSiteProfiles | 133 | 167 | 35 | 9.328 | ||
| Gene3D | 134 | 402 | 269 | 2.60E-07 | ||
| Pfam | 136 | 165 | 30 | 0.16 | ||
| ProSiteProfiles | 168 | 202 | 35 | 12.408 | ||
| Pfam | 169 | 213 | 45 | 2.90E-13 | ||
| TIGRFAM | 170 | 204 | 35 | 2.40E-07 | ||
| ProSiteProfiles | 203 | 237 | 35 | 9.788 | ||
| Pfam | 237 | 285 | 49 | 4.40E-16 | ||
| ProSiteProfiles | 238 | 272 | 35 | 13.515 | ||
| TIGRFAM | 240 | 274 | 35 | 3.00E-09 | ||
| ProSiteProfiles | 273 | 307 | 35 | 12.014 | ||
| TIGRFAM | 275 | 308 | 34 | 7.30E-08 | ||
| Pfam | 304 | 336 | 33 | 1.90E-09 | ||
| ProSiteProfiles | 308 | 342 | 35 | 11.564 | ||
| TIGRFAM | 310 | 343 | 34 | 9.10E-08 | ||
| ProSiteProfiles | 343 | 377 | 35 | 9.799 | ||
| Pfam | 345 | 384 | 40 | 1.60E-07 | ||
| TIGRFAM | 346 | 379 | 34 | 2.40E-06 | ||
| ProSiteProfiles | 412 | 446 | 35 | 7.673 | ||
| Pfam | 443 | 472 | 30 | 2.40E-10 | ||
| ProSiteProfiles | 447 | 481 | 35 | 12.945 | ||
| TIGRFAM | 449 | 482 | 34 | 3.60E-07 | ||
| Pfam | 481 | 529 | 49 | 6.00E-12 | ||
| ProSiteProfiles | 482 | 516 | 35 | 11.86 | ||
| TIGRFAM | 486 | 518 | 33 | 1.10E-07 | ||
| ProSiteProfiles | 517 | 551 | 35 | 7.081 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0965980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0965980.1, powered by CORGI.
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