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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1026600 |
| Transcript ID | Lj3g3v1026600.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like [Cicer arietinum] gi|502087841|ref|XP_004488659.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 28 | 58 | 31 | 5.568 | ||
| PANTHER | 48 | 121 | 74 | 0 | – | |
| PANTHER | 48 | 121 | 74 | 0 | – | |
| ProSiteProfiles | 59 | 89 | 31 | 10.095 | ||
| Pfam | 61 | 89 | 29 | 4.30E-06 | ||
| TIGRFAM | 61 | 89 | 29 | 1.10E-04 | ||
| ProSiteProfiles | 90 | 125 | 36 | 10.435 | ||
| Pfam | 93 | 122 | 30 | 0.007 | ||
| TIGRFAM | 124 | 154 | 31 | 2.30E-04 | ||
| Pfam | 124 | 148 | 25 | 0.0022 | ||
| ProSiteProfiles | 126 | 152 | 27 | 5.557 | ||
| Gene3D | 134 | 186 | 53 | 1.00E-04 | ||
| PANTHER | 150 | 660 | 511 | 0 | – | |
| PANTHER | 150 | 660 | 511 | 0 | – | |
| ProSiteProfiles | 155 | 185 | 31 | 9.81 | ||
| TIGRFAM | 160 | 188 | 29 | 2.50E-05 | ||
| Pfam | 185 | 213 | 29 | 2.10E-07 | ||
| ProSiteProfiles | 186 | 220 | 35 | 11.279 | ||
| TIGRFAM | 188 | 219 | 32 | 5.10E-06 | ||
| Pfam | 217 | 264 | 48 | 1.50E-10 | ||
| TIGRFAM | 219 | 247 | 29 | 4.90E-05 | ||
| ProSiteProfiles | 221 | 251 | 31 | 6.456 | ||
| ProSiteProfiles | 253 | 287 | 35 | 7.563 | ||
| ProSiteProfiles | 288 | 318 | 31 | 7.618 | ||
| Pfam | 293 | 320 | 28 | 0.0025 | ||
| Gene3D | 299 | 336 | 38 | 0.001 | ||
| ProSiteProfiles | 319 | 349 | 31 | 9.514 | ||
| TIGRFAM | 321 | 350 | 30 | 3.00E-04 | ||
| Pfam | 321 | 350 | 30 | 2.70E-05 | ||
| ProSiteProfiles | 350 | 380 | 31 | 10.49 | ||
| Pfam | 352 | 380 | 29 | 3.60E-07 | ||
| TIGRFAM | 352 | 380 | 29 | 5.10E-06 | ||
| ProSiteProfiles | 381 | 415 | 35 | 11.038 | ||
| Pfam | 381 | 426 | 46 | 1.70E-08 | ||
| TIGRFAM | 384 | 416 | 33 | 2.90E-06 | ||
| Gene3D | 384 | 517 | 134 | 0.001 | ||
| ProSiteProfiles | 416 | 450 | 35 | 5.393 | ||
| ProSiteProfiles | 451 | 481 | 31 | 7.037 | ||
| Pfam | 456 | 477 | 22 | 0.089 | ||
| Pfam | 481 | 528 | 48 | 1.70E-12 | ||
| ProSiteProfiles | 482 | 516 | 35 | 13.055 | ||
| TIGRFAM | 484 | 517 | 34 | 3.40E-10 | ||
| ProSiteProfiles | 517 | 547 | 31 | 7.892 | ||
| ProSiteProfiles | 553 | 583 | 31 | 7.256 | ||
| Pfam | 557 | 580 | 24 | 0.035 | ||
| ProSiteProfiles | 619 | 653 | 35 | 5.251 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v1026600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1026600.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.