Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v1061300.3

Overview

Field Value
Gene ID Lj3g3v1061300
Transcript ID Lj3g3v1061300.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TPR repeat-containing thioredoxin TTL1-like [Cicer arietinum] gi|502089840|ref|XP_004489036.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR22904
5 370 366 1.80E-264 –
PANTHER
PTHR22904:SF374
5 370 366 1.80E-264 –
Gene3D
G3DSA:1.25.40.10
19 123 105 3.60E-07
IPR011990
SUPERFAMILY
SSF48452
43 228 186 5.88E-17
IPR011990
SMART
SM00028
90 123 34 0.13
IPR019734
ProSiteProfiles
PS50005
90 123 34 7.051
IPR019734
ProSiteProfiles
PS50293
90 237 148 18.928
IPR013026
Pfam
PF13181
91 121 31 0.0018
IPR019734
SMART
SM00028
136 169 34 29
IPR019734
ProSiteProfiles
PS50005
136 169 34 7.139
IPR019734
Gene3D
G3DSA:1.25.40.10
140 251 112 5.00E-31
IPR011990
Pfam
PF13432
141 202 62 0.0014 –
SMART
SM00028
170 203 34 2.30E-04
IPR019734
ProSiteProfiles
PS50005
170 203 34 8.437
IPR019734
SUPERFAMILY
SSF52833
173 367 195 4.25E-27
IPR012336
ProSiteProfiles
PS50005
204 237 34 5.871
IPR019734
SMART
SM00028
204 237 34 14
IPR019734
Gene3D
G3DSA:3.40.30.10
271 367 97 5.90E-17
IPR012336
CDD
cd02947
275 356 82 1.91E-19 –
Pfam
PF00085
275 363 89 2.20E-12
IPR013766

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0045454
Biological process Cell redox homeostasis Any process that maintains the redox environment of a cell or compartment within a cell.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj3g3v1061300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1061300.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.