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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1169170 |
| Transcript ID | Lj3g3v1169170.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Cicer arietinum] gi|502083586|ref|XP_004487503.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | – | – | |
| SignalP | 1 | 23 | 23 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| Phobius | 16 | 23 | 8 | – | – | |
| Phobius | 24 | 624 | 601 | – | – | |
| Gene3D | 48 | 80 | 33 | 3.10E-07 | ||
| PANTHER | 55 | 494 | 440 | 3.40E-291 | – | |
| PANTHER | 55 | 494 | 440 | 3.40E-291 | – | |
| ProSiteProfiles | 119 | 149 | 31 | 7.3 | ||
| Gene3D | 149 | 177 | 29 | 3.10E-07 | ||
| ProSiteProfiles | 150 | 184 | 35 | 11.926 | ||
| TIGRFAM | 152 | 182 | 31 | 1.30E-06 | ||
| Pfam | 152 | 181 | 30 | 5.30E-07 | ||
| TIGRFAM | 183 | 212 | 30 | 2.40E-05 | ||
| Pfam | 183 | 207 | 25 | 5.90E-06 | ||
| ProSiteProfiles | 185 | 211 | 27 | 5.481 | ||
| Pfam | 212 | 248 | 37 | 2.10E-07 | ||
| ProSiteProfiles | 212 | 246 | 35 | 12.452 | ||
| TIGRFAM | 214 | 248 | 35 | 7.30E-09 | ||
| Gene3D | 225 | 226 | 2 | 3.10E-07 | ||
| ProSiteProfiles | 247 | 281 | 35 | 5.316 | ||
| ProSiteProfiles | 284 | 314 | 31 | 6.588 | ||
| Gene3D | 287 | 349 | 63 | 3.10E-07 | ||
| Pfam | 289 | 315 | 27 | 0.035 | ||
| ProSiteProfiles | 316 | 350 | 35 | 9.832 | ||
| TIGRFAM | 320 | 351 | 32 | 3.00E-05 | ||
| Pfam | 320 | 346 | 27 | 4.20E-05 | ||
| ProSiteProfiles | 351 | 381 | 31 | 6.467 | ||
| ProSiteProfiles | 387 | 417 | 31 | 7.377 | ||
| Pfam | 391 | 414 | 24 | 0.0059 | ||
| TIGRFAM | 391 | 414 | 24 | 0.0023 | ||
| Gene3D | 417 | 472 | 56 | 3.10E-07 | ||
| ProSiteProfiles | 453 | 487 | 35 | 9.416 | ||
| Pfam | 456 | 485 | 30 | 0.14 | ||
| Pfam | 489 | 613 | 125 | 1.50E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v1169170.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1169170.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.