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Lj3g3v1204530.1

Overview

Field Value
Gene ID Lj3g3v1204530
Transcript ID Lj3g3v1204530.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description mRNA-decapping enzyme-like protein [Medicago truncatula] gi|357453179|ref|XP_003596866.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR16290:SF3
1 240 240 1.30E-154 –
PANTHER
PTHR16290
1 240 240 1.30E-154
IPR010334
Pfam
PF06058
17 131 115 1.30E-43
IPR010334
CDD
cd13182
19 134 116 8.44E-61 –
SUPERFAMILY
SSF50729
19 137 119 2.46E-45
IPR011993
Gene3D
G3DSA:2.30.29.30
21 135 115 2.60E-38
IPR011993

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000290
Biological process Deadenylation-dependent decapping of nuclear-transcribed mRNA Cleavage of the 5'-cap of a nuclear mRNA triggered by shortening of the poly(A) tail to below a minimum functional length.
Subterm of
Part of
GO:0008047
Molecular function Enzyme activator activity Binds to and increases the activity of an enzyme.
Subterm of
GO:0043085
Biological process Positive regulation of catalytic activity Any process that activates or increases the activity of an enzyme.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v1204530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1204530.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.