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Lj3g3v1295700.1

Overview

Field Value
Gene ID Lj3g3v1295700
Transcript ID Lj3g3v1295700.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24078:SF237
1 257 257 7.10E-207 –
ProSiteProfiles
PS51188
1 58 58 17.662
IPR001305
PANTHER
PTHR24078
1 257 257 7.10E-207 –
SUPERFAMILY
SSF57938
2 56 55 1.01E-11
IPR001305
CDD
cd10719
2 53 52 1.94E-12 –
Gene3D
G3DSA:2.10.230.10
2 48 47 1.60E-13
IPR001305
Pfam
PF00684
2 53 52 8.00E-12
IPR001305
Pfam
PF01556
26 182 157 5.50E-32
IPR002939
SUPERFAMILY
SSF49493
45 107 63 5.23E-10
IPR008971
Gene3D
G3DSA:2.60.260.20
49 100 52 9.30E-17 –
CDD
cd10747
52 185 134 4.93E-41 –
Gene3D
G3DSA:2.60.260.20
104 183 80 4.20E-28 –
SUPERFAMILY
SSF49493
104 193 90 7.06E-20
IPR008971
MobiDBLite
mobidb-lite
217 257 41 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0031072
Molecular function Heat shock protein binding Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj3g3v1295700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1295700.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.