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Lj3g3v1338000.1

Overview

Field Value
Gene ID Lj3g3v1338000
Transcript ID Lj3g3v1338000.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356542838|ref|XP_003539872.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24326:SF200
27 145 119 0 –
PANTHER
PTHR24326
27 145 119 0 –
MobiDBLite
mobidb-lite
38 78 41 – –
Gene3D
G3DSA:1.10.10.60
48 124 77 4.00E-23
IPR009057
SUPERFAMILY
SSF46689
58 126 69 2.13E-19
IPR009057
ProSiteProfiles
PS50071
66 126 61 16.892
IPR001356
SMART
SM00389
67 130 64 1.00E-18
IPR001356
Pfam
PF00046
69 124 56 5.00E-18
IPR001356
CDD
cd00086
69 127 59 5.11E-19 –
ProSitePatterns
PS00027
101 124 24 –
IPR017970
Coils
Coil
125 152 28 – –
PANTHER
PTHR24326
174 187 14 0 –
PANTHER
PTHR24326:SF200
174 187 14 0 –
ProSiteProfiles
PS50848
250 482 233 44.672
IPR002913
SUPERFAMILY
SSF55961
250 481 232 1.32E-34 –
CDD
cd08875
254 478 225 4.15E-130 –
SMART
SM00234
259 479 221 5.20E-60
IPR002913
Pfam
PF01852
260 479 220 5.50E-57
IPR002913
Gene3D
G3DSA:3.30.530.20
348 460 113 8.10E-06
IPR023393
PANTHER
PTHR24326
455 736 282 0 –
PANTHER
PTHR24326:SF200
455 736 282 0 –
SUPERFAMILY
SSF55961
499 732 234 1.32E-21 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v1338000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1338000.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.