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Lj3g3v1541360.1

Overview

Field Value
Gene ID Lj3g3v1541360
Transcript ID Lj3g3v1541360.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: homeobox-leucine zipper protein PROTODERMAL FACTOR 2 [Vitis vinifera] gi|225444363|ref|XP_002266688.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 73 73 – –
PANTHER
PTHR24326:SF294
20 141 122 8.80E-226 –
PANTHER
PTHR24326
20 141 122 8.80E-226 –
SUPERFAMILY
SSF46689
50 122 73 1.00E-16
IPR009057
Gene3D
G3DSA:1.10.10.60
55 124 70 4.90E-18
IPR009057
ProSiteProfiles
PS50071
62 122 61 14.673
IPR001356
SMART
SM00389
64 126 63 9.90E-15
IPR001356
CDD
cd00086
65 123 59 6.05E-14 –
Pfam
PF00046
66 120 55 1.50E-14
IPR001356
ProSitePatterns
PS00027
97 120 24 –
IPR017970
Coils
Coil
114 148 35 – –
PANTHER
PTHR24326
170 183 14 8.80E-226 –
PANTHER
PTHR24326:SF294
170 183 14 8.80E-226 –
ProSiteProfiles
PS50848
244 476 233 45.064
IPR002913
SUPERFAMILY
SSF55961
245 475 231 1.69E-37 –
CDD
cd08875
248 472 225 1.98E-113 –
SMART
SM00234
253 473 221 1.50E-64
IPR002913
Pfam
PF01852
253 473 221 3.30E-49
IPR002913
Gene3D
G3DSA:3.30.530.20
313 473 161 3.00E-07
IPR023393
PANTHER
PTHR24326:SF294
449 724 276 8.80E-226 –
PANTHER
PTHR24326
449 724 276 8.80E-226 –
SUPERFAMILY
SSF55961
502 719 218 5.30E-21 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0008289
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.
Subterm of
GO:0043565
Molecular function Sequence-specific DNA binding Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
Subterm of

Genome browser

LORE1 insertions 9

Expression data

Expression pattern

Expression pattern of Lj3g3v1541360.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1541360.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.