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Lj3g3v1631860.1

Overview

Field Value
Gene ID Lj3g3v1631860
Transcript ID Lj3g3v1631860.1
Lotus japonicus genome version MG20 v3.0
Description phantastica transcription factor a [Lotus japonicus] gi|60476408|gb|AAX21343.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10641:SF457
1 320 320 9.50E-133
IPR031055
ProSiteProfiles
PS51294
1 57 57 23.679
IPR017930
PANTHER
PTHR10641
1 320 320 9.50E-133 –
SMART
SM00717
3 55 53 9.90E-14
IPR001005
SUPERFAMILY
SSF46689
4 98 95 2.01E-22
IPR009057
Gene3D
G3DSA:1.10.10.60
6 60 55 2.90E-20
IPR009057
CDD
cd00167
6 53 48 3.20E-09 –
Pfam
PF13921
7 68 62 1.80E-14 –
SMART
SM00717
58 106 49 2.80E-10
IPR001005
ProSiteProfiles
PS51294
58 108 51 19.081
IPR017930
Gene3D
G3DSA:1.10.10.60
61 102 42 2.70E-15
IPR009057
CDD
cd00167
63 104 42 1.47E-07 –
MobiDBLite
mobidb-lite
167 205 39 – –
Coils
Coil
257 325 69 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005634
Cellular component Nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0010338
Biological process Leaf formation The process that gives rise to a leaf. This process pertains to the initial formation of a structure from unspecified parts.
Subterm of
Part of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj3g3v1631860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1631860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.