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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1666260 |
| Transcript ID | Lj3g3v1666260.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase SDIR1-like isoform X2 [Cicer arietinum] gi|502148458|ref|XP_004507171.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 33 | 33 | – | – | |
| TMHMM | 33 | 52 | 20 | – | – | |
| Phobius | 34 | 53 | 20 | – | – | |
| PANTHER | 43 | 274 | 232 | 1.70E-129 | – | |
| PANTHER | 43 | 274 | 232 | 1.70E-129 | – | |
| Phobius | 54 | 59 | 6 | – | – | |
| Phobius | 60 | 80 | 21 | – | – | |
| TMHMM | 62 | 81 | 20 | – | – | |
| Phobius | 81 | 274 | 194 | – | – | |
| SUPERFAMILY | 207 | 257 | 51 | 1.27E-18 | – | |
| Gene3D | 208 | 255 | 48 | 8.70E-17 | ||
| CDD | 211 | 253 | 43 | 2.15E-10 | – | |
| Pfam | 211 | 253 | 43 | 5.80E-12 | ||
| ProSiteProfiles | 212 | 253 | 42 | 12.106 | ||
| SMART | 212 | 252 | 41 | 3.00E-07 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v1666260.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1666260.1, powered by CORGI.
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