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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1680410 |
| Transcript ID | Lj3g3v1680410.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transcription initiation factor IIA large subunit-like [Cicer arietinum] gi|502081823|ref|XP_004486980.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 389 | 387 | 3.30E-159 | ||
| PANTHER | 3 | 389 | 387 | 3.30E-159 | – | |
| Gene3D | 4 | 56 | 53 | 2.90E-17 | ||
| SUPERFAMILY | 8 | 50 | 43 | 1.70E-09 | ||
| SMART | 11 | 389 | 379 | 4.60E-87 | ||
| Pfam | 12 | 164 | 153 | 7.30E-11 | ||
| MobiDBLite | 123 | 148 | 26 | – | – | |
| MobiDBLite | 201 | 221 | 21 | – | – | |
| Pfam | 244 | 388 | 145 | 9.70E-30 | ||
| MobiDBLite | 311 | 340 | 30 | – | – | |
| SUPERFAMILY | 333 | 389 | 57 | 2.01E-21 | ||
| Gene3D | 333 | 389 | 57 | 1.00E-28 | ||
| CDD | 344 | 389 | 46 | 3.93E-26 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIA complex | A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of Lj3g3v1680410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1680410.1, powered by CORGI.
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