Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | Lj3g3v1876180 |
| Transcript ID | Lj3g3v1876180.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable peptide/nitrate transporter At3g54450-like [Glycine max] gi|356556821|ref|XP_003546719.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 70 | 70 | – | – | |
| PANTHER | 12 | 555 | 544 | 0 | ||
| PANTHER | 12 | 555 | 544 | 0 | – | |
| SUPERFAMILY | 17 | 220 | 204 | 6.02E-28 | ||
| CDD | 29 | 197 | 169 | 6.24E-07 | ||
| Gene3D | 36 | 218 | 183 | 2.70E-12 | – | |
| TMHMM | 68 | 90 | 23 | – | – | |
| Phobius | 71 | 90 | 20 | – | – | |
| ProSitePatterns | 82 | 106 | 25 | – | ||
| Phobius | 91 | 95 | 5 | – | – | |
| Pfam | 93 | 512 | 420 | 6.30E-91 | ||
| TMHMM | 95 | 117 | 23 | – | – | |
| Phobius | 96 | 117 | 22 | – | – | |
| Phobius | 118 | 165 | 48 | – | – | |
| TMHMM | 163 | 185 | 23 | – | – | |
| Phobius | 166 | 185 | 20 | – | – | |
| Phobius | 186 | 190 | 5 | – | – | |
| TMHMM | 189 | 211 | 23 | – | – | |
| Phobius | 191 | 211 | 21 | – | – | |
| Phobius | 212 | 319 | 108 | – | – | |
| SUPERFAMILY | 304 | 547 | 244 | 6.02E-28 | ||
| TMHMM | 316 | 338 | 23 | – | – | |
| Phobius | 320 | 341 | 22 | – | – | |
| Phobius | 342 | 360 | 19 | – | – | |
| Phobius | 361 | 378 | 18 | – | – | |
| Phobius | 379 | 397 | 19 | – | – | |
| TMHMM | 397 | 419 | 23 | – | – | |
| Phobius | 398 | 419 | 22 | – | – | |
| Phobius | 420 | 443 | 24 | – | – | |
| TMHMM | 444 | 466 | 23 | – | – | |
| Phobius | 444 | 470 | 27 | – | – | |
| Phobius | 471 | 481 | 11 | – | – | |
| TMHMM | 481 | 503 | 23 | – | – | |
| Phobius | 482 | 506 | 25 | – | – | |
| Phobius | 507 | 525 | 19 | – | – | |
| TMHMM | 524 | 546 | 23 | – | – | |
| Phobius | 526 | 545 | 20 | – | – | |
| Phobius | 546 | 575 | 30 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Oligopeptide transport | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transmembrane transporter activity | Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v1876180.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…
A list of the top 25 highly co-expressed genes of Lj3g3v1876180.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.