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Lj3g3v1982340.1

Overview

Field Value
Gene ID Lj3g3v1982340
Transcript ID Lj3g3v1982340.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: germin-like protein subfamily 3 member 4-like [Cicer arietinum] gi|502173445|ref|XP_004515331.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31238:SF3
1 163 163 3.40E-83 –
PANTHER
PTHR31238
1 163 163 3.40E-83 –
SMART
SM00835
1 136 136 4.60E-16
IPR006045
Pfam
PF00190
10 136 127 8.40E-30
IPR006045
Gene3D
G3DSA:2.60.120.10
13 127 115 6.10E-34
IPR014710
SUPERFAMILY
SSF51182
15 137 123 5.95E-29
IPR011051
ProSitePatterns
PS00725
43 56 14 –
IPR019780
PRINTS
PR00325
48 68 21 2.40E-20
IPR001929
PRINTS
PR00325
78 98 21 2.40E-20
IPR001929
PRINTS
PR00325
111 126 16 2.40E-20
IPR001929

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030145
Molecular function Manganese ion binding Interacting selectively and non-covalently with manganese (Mn) ions.
Subterm of
GO:0045735
Molecular function Nutrient reservoir activity Functions in the storage of nutritious substrates.
Subterm of

Genome browser

LORE1 insertions 20

Expression data

Expression pattern

Expression pattern of Lj3g3v1982340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1982340.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.