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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2054440 |
| Transcript ID | Lj3g3v2054440.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: calcium-transporting ATPase 9, plasma membrane-type-like [Glycine max] gi|356523453|ref|XP_003530353.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 201 | 201 | – | – | |
| MobiDBLite | 1 | 57 | 57 | – | – | |
| Pfam | 45 | 88 | 44 | 1.30E-17 | ||
| PANTHER | 45 | 940 | 896 | 0 | – | |
| PANTHER | 45 | 940 | 896 | 0 | – | |
| TIGRFAM | 144 | 1067 | 924 | 0 | ||
| SMART | 153 | 227 | 75 | 0.0016 | ||
| SUPERFAMILY | 154 | 273 | 120 | 7.85E-118 | – | |
| Pfam | 155 | 222 | 68 | 1.50E-11 | ||
| TMHMM | 199 | 221 | 23 | – | – | |
| Phobius | 202 | 227 | 26 | – | – | |
| Phobius | 228 | 238 | 11 | – | – | |
| TMHMM | 236 | 255 | 20 | – | – | |
| Phobius | 239 | 258 | 20 | – | – | |
| PRINTS | 240 | 260 | 21 | 5.00E-11 | – | |
| Pfam | 242 | 488 | 247 | 5.80E-43 | ||
| Phobius | 259 | 388 | 130 | – | – | |
| SUPERFAMILY | 275 | 370 | 96 | 5.62E-24 | – | |
| Gene3D | 315 | 374 | 60 | 5.20E-153 | ||
| PRINTS | 321 | 335 | 15 | 3.80E-34 | – | |
| TMHMM | 351 | 373 | 23 | – | – | |
| SUPERFAMILY | 373 | 491 | 119 | 7.85E-118 | – | |
| TMHMM | 388 | 410 | 23 | – | – | |
| Phobius | 389 | 413 | 25 | – | – | |
| Phobius | 414 | 442 | 29 | – | – | |
| TIGRFAM | 435 | 522 | 88 | 4.20E-22 | ||
| TMHMM | 443 | 465 | 23 | – | – | |
| Phobius | 443 | 469 | 27 | – | – | |
| Phobius | 470 | 863 | 394 | – | – | |
| Gene3D | 487 | 704 | 218 | 1.10E-47 | ||
| PRINTS | 490 | 511 | 22 | 5.00E-11 | – | |
| Pfam | 494 | 818 | 325 | 3.20E-16 | – | |
| SUPERFAMILY | 495 | 515 | 21 | 4.12E-56 | ||
| PRINTS | 497 | 511 | 15 | 3.80E-34 | – | |
| ProSitePatterns | 499 | 505 | 7 | – | ||
| SUPERFAMILY | 504 | 701 | 198 | 6.54E-36 | ||
| PRINTS | 616 | 634 | 19 | 5.00E-11 | – | |
| Coils | 639 | 659 | 21 | – | – | |
| SUPERFAMILY | 646 | 909 | 264 | 4.12E-56 | ||
| PRINTS | 697 | 708 | 12 | 3.80E-34 | – | |
| CDD | 707 | 819 | 113 | 1.95E-04 | – | |
| PRINTS | 719 | 729 | 11 | 3.80E-34 | – | |
| TIGRFAM | 771 | 885 | 115 | 2.40E-31 | ||
| Gene3D | 783 | 1066 | 284 | 5.20E-153 | ||
| PRINTS | 804 | 823 | 20 | 3.80E-34 | – | |
| PRINTS | 828 | 840 | 13 | 3.80E-34 | – | |
| SUPERFAMILY | 854 | 1067 | 214 | 7.85E-118 | – | |
| Phobius | 864 | 884 | 21 | – | – | |
| Phobius | 885 | 895 | 11 | – | – | |
| Pfam | 889 | 1063 | 175 | 1.40E-43 | ||
| Phobius | 896 | 915 | 20 | – | – | |
| Phobius | 916 | 935 | 20 | – | – | |
| Phobius | 936 | 955 | 20 | – | – | |
| PANTHER | 956 | 1089 | 134 | 0 | – | |
| Phobius | 956 | 974 | 19 | – | – | |
| PANTHER | 956 | 1089 | 134 | 0 | – | |
| Phobius | 975 | 991 | 17 | – | – | |
| Phobius | 992 | 1011 | 20 | – | – | |
| Phobius | 1012 | 1032 | 21 | – | – | |
| TMHMM | 1012 | 1031 | 20 | – | – | |
| Phobius | 1033 | 1043 | 11 | – | – | |
| TMHMM | 1038 | 1060 | 23 | – | – | |
| Phobius | 1044 | 1065 | 22 | – | – | |
| Phobius | 1066 | 1091 | 26 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Calcium-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + Ca2+(cis) = ADP + phosphate + Ca2+(trans). | ||
| Molecular function | Calmodulin binding | Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Calcium ion transmembrane transport | A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. |
Expression pattern of Lj3g3v2054440.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2054440.1, powered by CORGI.
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