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Lj3g3v2057520.1

Overview

Field Value
Gene ID Lj3g3v2057520
Transcript ID Lj3g3v2057520.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: KH domain-containing protein At4g18375-like [Cicer arietinum] gi|502148055|ref|XP_004507020.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10288:SF174
14 410 397 8.80E-169 –
PANTHER
PTHR10288
14 410 397 8.80E-169 –
SUPERFAMILY
SSF54791
97 174 78 2.19E-12
IPR004088
SMART
SM00322
97 171 75 4.30E-06
IPR004087
ProSiteProfiles
PS50084
98 166 69 13.837
IPR004088
Gene3D
G3DSA:3.30.1370.10
99 171 73 3.20E-13
IPR004088
Pfam
PF00013
103 163 61 3.50E-10
IPR004088
CDD
cd02396
103 167 65 9.04E-14 –
Gene3D
G3DSA:3.30.1370.10
241 298 58 2.50E-14
IPR004088
SMART
SM00322
242 318 77 6.10E-09
IPR004087
ProSiteProfiles
PS50084
243 310 68 14.173
IPR004088
SUPERFAMILY
SSF54791
244 323 80 3.21E-13
IPR004088
CDD
cd02396
245 314 70 1.80E-15 –
Pfam
PF00013
247 295 49 7.30E-12
IPR004088
SUPERFAMILY
SSF54791
322 403 82 2.34E-15
IPR004088
Gene3D
G3DSA:3.30.1370.10
325 401 77 1.60E-15
IPR004088
SMART
SM00322
326 400 75 3.20E-09
IPR004087
ProSiteProfiles
PS50084
327 395 69 14.906
IPR004088
Pfam
PF00013
329 396 68 3.70E-12
IPR004088
CDD
cd02396
329 396 68 4.23E-17 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v2057520.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2057520.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.