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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2248300 |
| Transcript ID | Lj3g3v2248300.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: coatomer subunit beta'-2-like [Glycine max] gi|356526157|ref|XP_003531686.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 916 | 915 | 0 | – | |
| PIRSF | 2 | 886 | 885 | 0 | ||
| PANTHER | 2 | 916 | 915 | 0 | – | |
| CDD | 3 | 297 | 295 | 4.60E-67 | – | |
| SMART | 4 | 43 | 40 | 0.81 | ||
| SUPERFAMILY | 6 | 297 | 292 | 2.56E-76 | ||
| ProSiteProfiles | 11 | 266 | 256 | 48.934 | ||
| Gene3D | 13 | 314 | 302 | 6.40E-79 | ||
| SMART | 46 | 85 | 40 | 24 | ||
| SMART | 88 | 127 | 40 | 8.50E-09 | ||
| Pfam | 91 | 127 | 37 | 6.70E-06 | ||
| ProSiteProfiles | 95 | 127 | 33 | 12.747 | ||
| SMART | 131 | 171 | 41 | 6.30E-09 | ||
| Pfam | 134 | 171 | 38 | 3.60E-04 | ||
| ProSiteProfiles | 138 | 180 | 43 | 13.616 | ||
| PRINTS | 158 | 172 | 15 | 2.20E-06 | ||
| SMART | 174 | 215 | 42 | 1.90E-07 | ||
| Pfam | 177 | 215 | 39 | 9.80E-06 | ||
| ProSiteProfiles | 181 | 224 | 44 | 12.547 | ||
| PRINTS | 202 | 216 | 15 | 2.20E-06 | ||
| SMART | 218 | 257 | 40 | 2.40E-11 | ||
| Pfam | 220 | 256 | 37 | 2.70E-08 | ||
| ProSiteProfiles | 225 | 266 | 42 | 15.488 | ||
| SUPERFAMILY | 227 | 309 | 83 | 1.70E-18 | ||
| PRINTS | 244 | 258 | 15 | 2.20E-06 | ||
| Pfam | 319 | 763 | 445 | 3.90E-163 | ||
| SUPERFAMILY | 345 | 496 | 152 | 1.70E-18 | ||
| Gene3D | 359 | 493 | 135 | 2.40E-04 | ||
| SMART | 452 | 490 | 39 | 440 | ||
| Gene3D | 603 | 733 | 131 | 9.40E-05 | ||
| MobiDBLite | 850 | 919 | 70 | – | – | |
| Gene3D | 854 | 879 | 26 | 2.40E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural molecule activity | The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. |
Expression pattern of Lj3g3v2248300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2248300.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.