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PF04053

Source: Pfam

Description

Coatomer WD associated region

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005198
Molecular function Structural molecule activity The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
Subterm of
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of
GO:0030117
Cellular component Membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
Subterm of
Part of

Associated Lotus transcripts 26

Transcript Name Description Predicted domains Domain count
Lj0g3v0246179.1
– PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cicer arietinum] gi|502080914|ref|XP_004486718.1|
Domains
6
Lj0g3v0246179.2
– PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cicer arietinum] gi|502080917|ref|XP_004486719.1|
Domains
6
Lj0g3v0330259.1
– PREDICTED: coatomer subunit alpha-1-like [Glycine max] gi|356576353|ref|XP_003556297.1|
Domains
4
Lj0g3v0330269.1
– CM0216.440.nc [Lotus japonicus] gi|164605514|dbj|BAF98580.1|
Domains
4
Lj3g3v0139610.1
– PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cicer arietinum] gi|502080917|ref|XP_004486719.1|
Domains
22
Lj3g3v2248300.1
– PREDICTED: coatomer subunit beta'-2-like [Glycine max] gi|356526157|ref|XP_003531686.1|
Domains
21
Lj3g3v3376170.1
– Coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1|
Domains
14
Lj3g3v3376180.1
– Coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1|
Domains
21
LotjaGi3g1v0015600.1
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
22
LotjaGi3g1v0015600.2
– Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VDQ5|A0A072VDQ5_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
22
LotjaGi3g1v0015600.3
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
22
LotjaGi3g1v0015600.4
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
21
LotjaGi3g1v0015600.5
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7GTF6|A0A1J7GTF6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0015600
Domains
10
LotjaGi3g1v0015600.6
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
22
LotjaGi3g1v0015600.7
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
22
LotjaGi3g1v0015600.8
– Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VDQ5|A0A072VDQ5_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
21
LotjaGi3g1v0015600.9
– Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VDQ5|A0A072VDQ5_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600
Domains
21
LotjaGi3g1v0362000.1
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A0S3T103|A0A0S3T103_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000
Domains
21
LotjaGi3g1v0362000.2
– Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7IWD2|A0A1J7IWD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000
Domains
20
LotjaGi3g1v0362000.3
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A0S3T103|A0A0S3T103_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000
Domains
10
LotjaGi3g1v0362000.4
– Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A0S3T103|A0A0S3T103_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000
Domains
21
LotjaGi3g1v0362000.5
– Coatomer subunit beta-like protein; TAIR: AT3G15980.5 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7IWD2|A0A1J7IWD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000
Domains
20
LotjaGi3g1v0362000.6
– Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7IWD2|A0A1J7IWD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000
Domains
20
LotjaGi3g1v0513100.1
– Coatomer subunit alpha; TAIR: AT2G21390.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2; TrEMBL-Plants: tr|Q70I39|Q70I39_LOTJA Coatomer subunit alpha; Found in the gene: LotjaGi3g1v0513100
Domains
26
LotjaGi3g1v0513100.2
– Coatomer subunit alpha; TAIR: AT2G21390.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2; TrEMBL-Plants: tr|Q70I39|Q70I39_LOTJA Coatomer subunit alpha; Found in the gene: LotjaGi3g1v0513100
Domains
26
LotjaGi5g1v0253000.1
– Coatomer subunit alpha; TAIR: AT1G62020.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1; TrEMBL-Plants: tr|V7BIE1|V7BIE1_PHAVU Coatomer subunit alpha; Found in the gene: LotjaGi5g1v0253000
Domains
27

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
cd00200 CDD 1 3.85