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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006692
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We have found 26 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.810s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0246179.1
n.a. PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cicer arietinum] gi|502080914|ref|XP_004486718.1| chr0 127512061 127515599 -
2 domain predictions
4 GO terms
Lj0g3v0246179.2
n.a. PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cicer arietinum] gi|502080917|ref|XP_004486719.1| chr0 127512061 127515599 -
2 domain predictions
4 GO terms
Lj0g3v0330259.1
n.a. PREDICTED: coatomer subunit alpha-1-like [Glycine max] gi|356576353|ref|XP_003556297.1| chr0 172623266 172623675 -
2 domain predictions
4 GO terms
Lj0g3v0330269.1
n.a. CM0216.440.nc [Lotus japonicus] gi|164605514|dbj|BAF98580.1| chr0 172623622 172624606 -
2 domain predictions
4 GO terms
Lj3g3v0139610.1
n.a. PREDICTED: coatomer subunit beta'-2-like isoform X2 [Cicer arietinum] gi|502080917|ref|XP_004486719.1| chr3 1120606 1131224 -
2 domain predictions
4 GO terms
Lj3g3v2248300.1
n.a. PREDICTED: coatomer subunit beta'-2-like [Glycine max] gi|356526157|ref|XP_003531686.1| chr3 27859686 27870396 -
2 domain predictions
4 GO terms
Lj3g3v3376170.1
n.a. coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1| chr3 41586490 41590168 -
2 domain predictions
4 GO terms
Lj3g3v3376180.1
n.a. coatomer alpha subunit-like protein [Lotus japonicus] gi|33945873|emb|CAE45585.1| chr3 41588152 41597640 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.1
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1642641 1654061 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.2
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VDQ5|A0A072VDQ5_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1643277 1652533 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.3
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1644595 1653642 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.4
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1644766 1652509 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.5
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7GTF6|A0A1J7GTF6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1644766 1653642 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.6
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1644766 1653642 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.7
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VC11|A0A072VC11_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1644766 1653773 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.8
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VDQ5|A0A072VDQ5_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1645075 1653642 -
2 domain predictions
4 GO terms
LotjaGi3g1v0015600.9
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A072VDQ5|A0A072VDQ5_MEDTR Coatomer subunit beta-like protein; Found in the gene: LotjaGi3g1v0015600 LjG1.1_chr3 1645105 1652533 -
2 domain predictions
4 GO terms
LotjaGi3g1v0362000.1
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A0S3T103|A0A0S3T103_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000 LjG1.1_chr3 74570000 74581429 -
2 domain predictions
4 GO terms
LotjaGi3g1v0362000.2
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7IWD2|A0A1J7IWD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000 LjG1.1_chr3 74571013 74580908 -
2 domain predictions
4 GO terms
LotjaGi3g1v0362000.3
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A0S3T103|A0A0S3T103_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000 LjG1.1_chr3 74571013 74580908 -
2 domain predictions
4 GO terms
LotjaGi3g1v0362000.4
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.1 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A0S3T103|A0A0S3T103_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000 LjG1.1_chr3 74571013 74580908 -
2 domain predictions
4 GO terms
LotjaGi3g1v0362000.5
n.a. Coatomer subunit beta-like protein; TAIR: AT3G15980.5 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7IWD2|A0A1J7IWD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000 LjG1.1_chr3 74571322 74580908 -
2 domain predictions
4 GO terms
LotjaGi3g1v0362000.6
n.a. Coatomer subunit beta-like protein; TAIR: AT1G52360.3 Coatomer, beta' subunit; Swiss-Prot: sp|Q9C827|COB22_ARATH Coatomer subunit beta'-2; TrEMBL-Plants: tr|A0A1J7IWD2|A0A1J7IWD2_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0362000 LjG1.1_chr3 74571322 74580908 -
2 domain predictions
4 GO terms
LotjaGi3g1v0513100.1
n.a. Coatomer subunit alpha; TAIR: AT2G21390.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2; TrEMBL-Plants: tr|Q70I39|Q70I39_LOTJA Coatomer subunit alpha; Found in the gene: LotjaGi3g1v0513100 LjG1.1_chr3 92974577 92981309 -
2 domain predictions
4 GO terms
LotjaGi3g1v0513100.2
n.a. Coatomer subunit alpha; TAIR: AT2G21390.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2; TrEMBL-Plants: tr|Q70I39|Q70I39_LOTJA Coatomer subunit alpha; Found in the gene: LotjaGi3g1v0513100 LjG1.1_chr3 92975829 92980709 -
2 domain predictions
4 GO terms
LotjaGi5g1v0253000.1
n.a. Coatomer subunit alpha; TAIR: AT1G62020.1 Coatomer, alpha subunit; Swiss-Prot: sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1; TrEMBL-Plants: tr|V7BIE1|V7BIE1_PHAVU Coatomer subunit alpha; Found in the gene: LotjaGi5g1v0253000 LjG1.1_chr5 56211495 56216991 +
2 domain predictions
4 GO terms