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Lj3g3v2532280.1

Overview

Field Value
Gene ID Lj3g3v2532280
Transcript ID Lj3g3v2532280.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Glycine max] gi|356504209|ref|XP_003520891.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE_N_REGION
1 21 21 – –
Phobius
SIGNAL_PEPTIDE
1 36 36 – –
PANTHER
PTHR27000
7 207 201 1.90E-71 –
PANTHER
PTHR27000:SF208
7 207 201 1.90E-71 –
TMHMM
TMhelix
17 39 23 – –
Phobius
SIGNAL_PEPTIDE_H_REGION
22 32 11 – –
Phobius
SIGNAL_PEPTIDE_C_REGION
33 36 4 – –
Phobius
NON_CYTOPLASMIC_DOMAIN
37 220 184 – –
SUPERFAMILY
SSF52058
40 211 172 2.21E-21
IPR032675
Gene3D
G3DSA:3.80.10.10
40 210 171 2.40E-26
IPR032675
Pfam
PF08263
44 84 41 1.60E-08
IPR013210
PRINTS
PR00019
113 126 14 8.40E-06 –
PRINTS
PR00019
135 148 14 8.40E-06 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 11

Expression data

Expression pattern

Expression pattern of Lj3g3v2532280.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2532280.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.