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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2576540 |
| Transcript ID | Lj3g3v2576540.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transmembrane protein 87A-like [Cicer arietinum] gi|502156540|ref|XP_004510525.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 505 | 505 | 0 | ||
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 1 | 19 | 19 | – | – | |
| PANTHER | 1 | 505 | 505 | 0 | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| SignalP | 1 | 21 | 21 | – | – | |
| SignalP | 1 | 19 | 19 | – | – | |
| Phobius | 4 | 15 | 12 | – | – | |
| Phobius | 16 | 19 | 4 | – | – | |
| Phobius | 20 | 206 | 187 | – | – | |
| Pfam | 163 | 449 | 287 | 6.80E-107 | ||
| TMHMM | 207 | 228 | 22 | – | – | |
| Phobius | 207 | 225 | 19 | – | – | |
| Phobius | 226 | 236 | 11 | – | – | |
| TMHMM | 235 | 257 | 23 | – | – | |
| Phobius | 237 | 257 | 21 | – | – | |
| Phobius | 258 | 284 | 27 | – | – | |
| TMHMM | 272 | 294 | 23 | – | – | |
| Phobius | 285 | 301 | 17 | – | – | |
| Phobius | 302 | 307 | 6 | – | – | |
| TMHMM | 307 | 329 | 23 | – | – | |
| Phobius | 308 | 326 | 19 | – | – | |
| Phobius | 327 | 345 | 19 | – | – | |
| TMHMM | 344 | 366 | 23 | – | – | |
| Phobius | 346 | 369 | 24 | – | – | |
| Phobius | 370 | 389 | 20 | – | – | |
| TMHMM | 387 | 408 | 22 | – | – | |
| Phobius | 390 | 408 | 19 | – | – | |
| Phobius | 409 | 419 | 11 | – | – | |
| Phobius | 420 | 444 | 25 | – | – | |
| TMHMM | 423 | 445 | 23 | – | – | |
| Phobius | 445 | 505 | 61 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v2576540.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2576540.2, powered by CORGI.
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