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Lj3g3v2664350.1

Overview

Field Value
Gene ID Lj3g3v2664350
Transcript ID Lj3g3v2664350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic initiation factor 4A-10-like [Glycine max] gi|356550410|ref|XP_003543580.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
12 413 402 0 –
PANTHER
PTHR24031:SF322
12 413 402 0 –
Gene3D
G3DSA:3.40.50.300
37 252 216 2.40E-70
IPR027417
ProSiteProfiles
PS51195
40 68 29 10.321
IPR014014
CDD
cd00268
42 242 201 3.83E-102 –
SMART
SM00487
59 256 198 1.40E-54
IPR014001
Pfam
PF00270
65 226 162 6.10E-40
IPR011545
ProSiteProfiles
PS51192
71 241 171 28.359
IPR014001
SUPERFAMILY
SSF52540
109 394 286 2.83E-73
IPR027417
ProSitePatterns
PS00039
187 195 9 –
IPR000629
ProSiteProfiles
PS51194
252 413 162 26.06
IPR001650
Gene3D
G3DSA:3.40.50.300
253 409 157 1.60E-55
IPR027417
CDD
cd00079
253 382 130 7.70E-44 –
Pfam
PF00271
266 374 109 5.50E-29
IPR001650
SMART
SM00490
293 374 82 2.10E-31
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v2664350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2664350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.