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Lj3g3v2667550.1

Overview

Field Value
Gene ID Lj3g3v2667550
Transcript ID Lj3g3v2667550.1
Lotus japonicus genome version MG20 v3.0
Description NBS resistance protein [Medicago truncatula] gi|357513713|ref|XP_003627145.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF52540
1 215 215 2.39E-40
IPR027417
PANTHER
PTHR11017
1 344 344 6.50E-189 –
Pfam
PF00931
1 223 223 3.30E-22
IPR002182
PANTHER
PTHR11017:SF162
1 344 344 6.50E-189 –
PRINTS
PR00364
64 78 15 3.90E-10 –
PRINTS
PR00364
156 170 15 3.90E-10 –
SUPERFAMILY
SSF52058
261 276 16 4.42E-26
IPR032675
SUPERFAMILY
SSF52058
330 603 274 4.42E-26
IPR032675
Gene3D
G3DSA:3.80.10.10
363 606 244 1.00E-26
IPR032675
PANTHER
PTHR11017
367 501 135 6.50E-189 –
PANTHER
PTHR11017:SF162
367 501 135 6.50E-189 –
Pfam
PF07725
389 408 20 3.70E-07
IPR011713
PANTHER
PTHR11017:SF162
563 808 246 6.50E-189 –
PANTHER
PTHR11017
563 808 246 6.50E-189 –
PRINTS
PR00364
569 585 17 3.90E-10 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0043531
Molecular function ADP binding Interacting selectively and non-covalently with ADP, adenosine 5'-diphosphate.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v2667550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2667550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.