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Lj3g3v2927380.1

Overview

Field Value
Gene ID Lj3g3v2927380
Transcript ID Lj3g3v2927380.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description seed maturation protein PM37 [Glycine max] gi|351724545|ref|NP_001238341.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
CDD
cd10719
1 32 32 4.34E-08 –
PANTHER
PTHR24078:SF237
1 236 236 1.10E-179 –
PANTHER
PTHR24078
1 236 236 1.10E-179 –
Gene3D
G3DSA:2.10.230.10
2 29 28 1.60E-07
IPR001305
SUPERFAMILY
SSF57938
2 34 33 2.22E-07
IPR001305
SUPERFAMILY
SSF49493
24 85 62 2.49E-08
IPR008971
Pfam
PF01556
26 161 136 1.70E-31
IPR002939
Gene3D
G3DSA:2.60.260.20
30 78 49 1.50E-13 –
CDD
cd10747
35 164 130 1.84E-39 –
SUPERFAMILY
SSF49493
83 170 88 2.22E-20
IPR008971
Gene3D
G3DSA:2.60.260.20
83 162 80 2.60E-30 –
MobiDBLite
mobidb-lite
195 236 42 – –
Coils
Coil
201 221 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0031072
Molecular function Heat shock protein binding Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj3g3v2927380.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2927380.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.