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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3031050 |
| Transcript ID | Lj3g3v3031050.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 18 | 52 | 35 | 6.807 | ||
| PANTHER | 26 | 364 | 339 | 4.60E-108 | – | |
| PANTHER | 26 | 364 | 339 | 4.60E-108 | – | |
| Pfam | 52 | 92 | 41 | 1.80E-12 | ||
| Gene3D | 53 | 221 | 169 | 2.20E-05 | ||
| ProSiteProfiles | 53 | 87 | 35 | 13.34 | ||
| TIGRFAM | 56 | 89 | 34 | 1.40E-09 | ||
| ProSiteProfiles | 88 | 122 | 35 | 10.885 | ||
| TIGRFAM | 91 | 124 | 34 | 1.30E-06 | ||
| Pfam | 118 | 150 | 33 | 1.10E-09 | ||
| ProSiteProfiles | 123 | 157 | 35 | 12.759 | ||
| TIGRFAM | 126 | 157 | 32 | 1.70E-07 | ||
| ProSiteProfiles | 158 | 192 | 35 | 10.052 | ||
| TIGRFAM | 160 | 193 | 34 | 2.50E-04 | ||
| Pfam | 161 | 190 | 30 | 0.0067 | ||
| Pfam | 197 | 246 | 50 | 1.90E-12 | ||
| ProSiteProfiles | 198 | 232 | 35 | 11.367 | ||
| TIGRFAM | 200 | 234 | 35 | 1.70E-07 | ||
| ProSiteProfiles | 233 | 267 | 35 | 11.038 | ||
| TIGRFAM | 235 | 266 | 32 | 1.10E-05 | ||
| ProSiteProfiles | 281 | 315 | 35 | 7.629 | ||
| ProSiteProfiles | 368 | 402 | 35 | 6.051 | ||
| PANTHER | 380 | 429 | 50 | 4.60E-108 | – | |
| PANTHER | 380 | 429 | 50 | 4.60E-108 | – | |
| ProSiteProfiles | 403 | 437 | 35 | 8.791 | ||
| Pfam | 406 | 435 | 30 | 0.002 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3031050.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3031050.1, powered by CORGI.
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