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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3085640 |
| Transcript ID | Lj3g3v3085640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like isoform X1 [Cicer arietinum] gi|502123558|ref|XP_004498166.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 43 | 73 | 31 | 10.523 | ||
| SUPERFAMILY | 45 | 276 | 232 | 1.40E-06 | ||
| PANTHER | 46 | 356 | 311 | 6.30E-140 | – | |
| TIGRFAM | 46 | 73 | 28 | 7.10E-05 | ||
| Pfam | 46 | 73 | 28 | 1.50E-04 | ||
| Gene3D | 46 | 202 | 157 | 8.10E-09 | ||
| PANTHER | 46 | 356 | 311 | 6.30E-140 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 12.923 | ||
| Pfam | 74 | 122 | 49 | 8.30E-13 | ||
| TIGRFAM | 77 | 110 | 34 | 1.80E-08 | ||
| ProSiteProfiles | 109 | 143 | 35 | 11.816 | ||
| TIGRFAM | 112 | 144 | 33 | 2.10E-05 | ||
| Pfam | 143 | 192 | 50 | 9.90E-15 | ||
| ProSiteProfiles | 144 | 178 | 35 | 12.397 | ||
| TIGRFAM | 146 | 179 | 34 | 2.10E-06 | ||
| Coils | 161 | 181 | 21 | – | – | |
| ProSiteProfiles | 179 | 213 | 35 | 12.266 | ||
| TIGRFAM | 182 | 215 | 34 | 1.50E-08 | ||
| ProSiteProfiles | 214 | 248 | 35 | 11.4 | ||
| TIGRFAM | 217 | 249 | 33 | 8.50E-06 | ||
| Pfam | 217 | 260 | 44 | 2.50E-10 | ||
| ProSiteProfiles | 249 | 283 | 35 | 9.821 | ||
| TIGRFAM | 252 | 284 | 33 | 1.00E-04 | ||
| ProSiteProfiles | 292 | 326 | 35 | 11.63 | ||
| Pfam | 293 | 340 | 48 | 1.30E-11 | ||
| TIGRFAM | 294 | 328 | 35 | 3.90E-06 | ||
| ProSiteProfiles | 327 | 361 | 35 | 8.923 | ||
| TIGRFAM | 329 | 360 | 32 | 0.002 | ||
| PANTHER | 377 | 464 | 88 | 6.30E-140 | – | |
| PANTHER | 377 | 464 | 88 | 6.30E-140 | – | |
| ProSiteProfiles | 381 | 415 | 35 | 6.643 | ||
| ProSiteProfiles | 468 | 502 | 35 | 7.333 | ||
| PANTHER | 480 | 614 | 135 | 6.30E-140 | – | |
| PANTHER | 480 | 614 | 135 | 6.30E-140 | – | |
| Pfam | 502 | 550 | 49 | 2.10E-07 | ||
| ProSiteProfiles | 503 | 537 | 35 | 10.95 | ||
| TIGRFAM | 506 | 537 | 32 | 5.00E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3085640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3085640.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.