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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3152980 |
| Transcript ID | Lj3g3v3152980.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial-like [Glycine max] gi|356544600|ref|XP_003540737.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 333 | 325 | 2.00E-182 | – | |
| PANTHER | 9 | 333 | 325 | 2.00E-182 | – | |
| ProSiteProfiles | 27 | 61 | 35 | 8.418 | ||
| Gene3D | 29 | 293 | 265 | 8.80E-08 | ||
| SUPERFAMILY | 44 | 230 | 187 | 3.79E-05 | ||
| Pfam | 61 | 105 | 45 | 1.80E-15 | ||
| ProSiteProfiles | 62 | 96 | 35 | 12.189 | ||
| TIGRFAM | 64 | 97 | 34 | 2.40E-08 | ||
| ProSiteProfiles | 97 | 131 | 35 | 11.509 | ||
| TIGRFAM | 99 | 129 | 31 | 1.80E-06 | ||
| ProSiteProfiles | 132 | 166 | 35 | 11.279 | ||
| Pfam | 132 | 178 | 47 | 5.10E-09 | ||
| TIGRFAM | 134 | 166 | 33 | 2.30E-04 | ||
| ProSiteProfiles | 167 | 201 | 35 | 10.402 | ||
| TIGRFAM | 171 | 203 | 33 | 1.30E-05 | ||
| Pfam | 201 | 250 | 50 | 7.20E-21 | ||
| ProSiteProfiles | 202 | 236 | 35 | 13.57 | ||
| TIGRFAM | 204 | 238 | 35 | 2.60E-10 | ||
| ProSiteProfiles | 237 | 271 | 35 | 10.238 | ||
| TIGRFAM | 240 | 271 | 32 | 4.10E-05 | ||
| ProSiteProfiles | 272 | 306 | 35 | 8.692 | ||
| TIGRFAM | 275 | 307 | 33 | 6.10E-04 | ||
| Pfam | 275 | 303 | 29 | 0.0095 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3152980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3152980.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.