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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3214320 |
| Transcript ID | Lj3g3v3214320.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g59600-like [Glycine max] gi|356541211|ref|XP_003539074.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 20 | 547 | 528 | 0 | – | |
| PANTHER | 20 | 547 | 528 | 0 | – | |
| ProSiteProfiles | 28 | 62 | 35 | 5.799 | ||
| Gene3D | 68 | 148 | 81 | 3.70E-07 | ||
| ProSiteProfiles | 94 | 124 | 31 | 7.881 | ||
| Pfam | 98 | 122 | 25 | 8.60E-04 | ||
| ProSiteProfiles | 131 | 165 | 35 | 5.163 | ||
| ProSiteProfiles | 166 | 196 | 31 | 8.407 | ||
| Pfam | 171 | 194 | 24 | 0.0039 | ||
| TIGRFAM | 172 | 197 | 26 | 0.0027 | ||
| ProSiteProfiles | 197 | 231 | 35 | 10.665 | ||
| Pfam | 199 | 224 | 26 | 0.0034 | ||
| Gene3D | 200 | 225 | 26 | 3.70E-07 | ||
| Pfam | 231 | 279 | 49 | 2.40E-10 | ||
| ProSiteProfiles | 232 | 266 | 35 | 10.216 | ||
| TIGRFAM | 234 | 268 | 35 | 7.90E-06 | ||
| ProSiteProfiles | 267 | 301 | 35 | 10.6 | ||
| TIGRFAM | 269 | 302 | 34 | 1.70E-06 | ||
| SUPERFAMILY | 336 | 507 | 172 | 2.33E-05 | ||
| ProSiteProfiles | 337 | 367 | 31 | 8.703 | ||
| Gene3D | 338 | 395 | 58 | 3.70E-07 | ||
| Pfam | 367 | 416 | 50 | 2.50E-09 | ||
| ProSiteProfiles | 368 | 402 | 35 | 10.972 | ||
| TIGRFAM | 370 | 399 | 30 | 6.20E-06 | ||
| ProSiteProfiles | 404 | 434 | 31 | 8.144 | ||
| ProSiteProfiles | 440 | 470 | 31 | 6.533 | ||
| Pfam | 444 | 467 | 24 | 0.5 | ||
| Gene3D | 464 | 524 | 61 | 3.70E-07 | ||
| ProSiteProfiles | 472 | 506 | 35 | 6.16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3214320.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3214320.1, powered by CORGI.
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