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Lj3g3v3235420.1

Overview

Field Value
Gene ID Lj3g3v3235420
Transcript ID Lj3g3v3235420.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor IIA large subunit-like [Cicer arietinum] gi|502081823|ref|XP_004486980.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12694:SF8
1 387 387 3.70E-157 –
Gene3D
G3DSA:1.10.287.100
1 52 52 9.10E-17
IPR013028
PANTHER
PTHR12694
1 387 387 3.70E-157
IPR004855
SUPERFAMILY
SSF47396
5 47 43 4.97E-10
IPR009083
SMART
SM01371
8 387 380 2.90E-84
IPR004855
Pfam
PF03153
9 106 98 1.30E-11
IPR004855
Pfam
PF03153
182 386 205 1.10E-30
IPR004855
MobiDBLite
mobidb-lite
309 337 29 – –
Gene3D
G3DSA:2.30.18.10
331 387 57 5.70E-29
IPR009088
SUPERFAMILY
SSF50784
331 387 57 8.37E-22
IPR009088
CDD
cd07976
342 387 46 3.16E-27
IPR004855

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005672
Cellular component Transcription factor TFIIA complex A component of the transcription machinery of RNA Polymerase II. In humans, TFIIA is a heterotrimer composed of an alpha (P35), beta (P19) and gamma subunits (P12).
Subterm of
Part of
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj3g3v3235420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3235420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.