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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3243170 |
| Transcript ID | Lj3g3v3243170.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Heavy metal ATPase [Medicago truncatula] gi|357513319|ref|XP_003626948.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | – | – | |
| SignalP | 1 | 39 | 39 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| PANTHER | 2 | 384 | 383 | 2.00E-264 | – | |
| PANTHER | 2 | 384 | 383 | 2.00E-264 | – | |
| TIGRFAM | 4 | 345 | 342 | 5.50E-58 | ||
| Pfam | 5 | 52 | 48 | 2.40E-11 | ||
| TIGRFAM | 6 | 377 | 372 | 3.20E-125 | ||
| Phobius | 6 | 26 | 21 | – | – | |
| TMHMM | 12 | 34 | 23 | – | – | |
| Phobius | 27 | 327 | 301 | – | – | |
| Gene3D | 32 | 75 | 44 | 7.60E-53 | ||
| Pfam | 57 | 282 | 226 | 9.40E-44 | – | |
| SUPERFAMILY | 59 | 79 | 21 | 1.46E-54 | ||
| PRINTS | 61 | 75 | 15 | 5.60E-22 | – | |
| ProSitePatterns | 63 | 69 | 7 | – | ||
| Gene3D | 76 | 195 | 120 | 2.70E-16 | ||
| SUPERFAMILY | 125 | 374 | 250 | 1.46E-54 | ||
| PRINTS | 193 | 204 | 12 | 5.60E-22 | – | |
| Gene3D | 196 | 337 | 142 | 7.60E-53 | ||
| PRINTS | 215 | 225 | 11 | 5.60E-22 | – | |
| PRINTS | 240 | 256 | 17 | 4.90E-11 | ||
| PRINTS | 268 | 287 | 20 | 5.60E-22 | – | |
| PRINTS | 268 | 284 | 17 | 4.90E-11 | ||
| PRINTS | 291 | 303 | 13 | 5.60E-22 | – | |
| PRINTS | 299 | 324 | 26 | 4.90E-11 | ||
| TMHMM | 328 | 350 | 23 | – | – | |
| Phobius | 328 | 350 | 23 | – | – | |
| Phobius | 351 | 355 | 5 | – | – | |
| Phobius | 356 | 380 | 25 | – | – | |
| TMHMM | 357 | 379 | 23 | – | – | |
| Phobius | 381 | 389 | 9 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Biological process | Cation transport | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Cation-transporting ATPase activity | Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + cation(out) = ADP + phosphate + cation(in). |
Expression pattern of Lj3g3v3243170.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3243170.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.