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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3336120 |
| Transcript ID | Lj3g3v3336120.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 555 | 555 | 0 | – | |
| Gene3D | 1 | 29 | 29 | 1.10E-04 | ||
| PANTHER | 1 | 555 | 555 | 0 | – | |
| SMART | 70 | 156 | 87 | 3.40E-47 | ||
| Pfam | 70 | 155 | 86 | 2.20E-32 | ||
| MobiDBLite | 277 | 316 | 40 | – | – | |
| MobiDBLite | 339 | 386 | 48 | – | – | |
| MobiDBLite | 415 | 455 | 41 | – | – | |
| SMART | 524 | 853 | 330 | 2.50E-142 | ||
| Pfam | 532 | 854 | 323 | 3.30E-88 | ||
| MobiDBLite | 552 | 581 | 30 | – | – | |
| PANTHER | 575 | 1022 | 448 | 0 | – | |
| PANTHER | 575 | 1022 | 448 | 0 | – | |
| Gene3D | 780 | 814 | 35 | 1.10E-04 | ||
| MobiDBLite | 919 | 946 | 28 | – | – | |
| Coils | 972 | 1010 | 39 | – | – | |
| MobiDBLite | 973 | 1022 | 50 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of Lj3g3v3336120.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3336120.1, powered by CORGI.
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