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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012948
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 8 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.755s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2280660.1
n.a. PREDICTED: pre-rRNA-processing protein TSR1 homolog [Glycine max] gi|356508752|ref|XP_003523118.1| chr1 26796685 26804951 -
3 domain predictions
2 GO terms
Lj1g3v4831840.1
n.a. PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| chr1 58530788 58540505 +
3 domain predictions
2 GO terms
Lj1g3v4831840.2
n.a. PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| chr1 58532935 58540505 +
3 domain predictions
2 GO terms
Lj3g3v3336120.1
n.a. PREDICTED: ribosome biogenesis protein BMS1 homolog [Glycine max] gi|356544500|ref|XP_003540688.1| chr3 40573229 40580886 -
3 domain predictions
2 GO terms
LotjaGi1g1v0435400.1
n.a. Pre-rRNA-processing protein TSR1 like; TAIR: AT1G42440.1 pre-rRNA-processing TSR1-like protein; Swiss-Prot: sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog; TrEMBL-Plants: tr|I1JSW0|I1JSW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0435400 LjG1.1_chr1 92968067 92976736 -
3 domain predictions
2 GO terms
LotjaGi1g1v0435400.2
n.a. Pre-rRNA-processing protein TSR1 like; TAIR: AT1G42440.1 pre-rRNA-processing TSR1-like protein; Swiss-Prot: sp|Q5XGY1|TSR1_XENLA Pre-rRNA-processing protein TSR1 homolog; TrEMBL-Plants: tr|I1JSW0|I1JSW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0435400 LjG1.1_chr1 92968401 92976708 -
3 domain predictions
2 GO terms
LotjaGi1g1v0756800.1
n.a. Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0756800 LjG1.1_chr1 133002426 133013344 +
3 domain predictions
2 GO terms
LotjaGi1g1v0756800.2
n.a. Ribosome biogenesis protein BMS1; TAIR: AT1G06720.2 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|O94653|BMS1_SCHPO Ribosome biogenesis protein bms1; TrEMBL-Plants: tr|I1LQB2|I1LQB2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0756800 LjG1.1_chr1 133005653 133013407 +
3 domain predictions
2 GO terms