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Lj3g3v3338240.3

Overview

Field Value
Gene ID Lj3g3v3338240
Transcript ID Lj3g3v3338240.3
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase ARI1-like isoform 1 [Glycine max] gi|356538827|ref|XP_003537902.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 41 41 – –
PANTHER
PTHR11685
2 531 530 0
IPR031127
PANTHER
PTHR11685:SF119
2 531 530 0 –
Gene3D
G3DSA:3.30.40.10
119 177 59 1.20E-04
IPR013083
SUPERFAMILY
SSF57850
121 206 86 3.14E-18 –
ProSiteProfiles
PS50089
123 171 49 9.745
IPR001841
Pfam
PF01485
194 256 63 4.70E-14
IPR002867
SMART
SM00647
194 256 63 1.10E-22
IPR002867
SUPERFAMILY
SSF57850
194 262 69 5.55E-11 –
SMART
SM00647
264 329 66 0.11
IPR002867
SUPERFAMILY
SSF57850
275 317 43 2.67E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v3338240.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3338240.3, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.